PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676791648 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 202aa MW: 23177 Da PI: 10.077 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.7 | 3.1e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++ rqvtfskRr g++KKA+ELS+LCda+va iifs++g+ly+++s 676791648 9 KKIENTTSRQVTFSKRRSGLFKKAHELSILCDAQVAAIIFSQKGRLYDFAS 59 68***********************************************86 PP | |||||||
2 | K-box | 68 | 3e-23 | 85 | 169 | 11 | 95 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 e+ + l++e+ + ++ie+L+ +R+l+G++L+s+s+keLq++ +q+eksl +RskK +l+ +++e+l+ ke+el++e +L 676791648 85 EQYVQGLKKEMVTMVQKIEMLEVHNRKLMGQGLGSCSVKELQEITTQIEKSLHIVRSKKAKLYGDEVEKLKVKERELKDERVRLY 169 56678999**************999******************************************************998886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.2E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.469 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.33E-31 | 3 | 84 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.83E-40 | 3 | 73 | No hit | No description |
PRINTS | PR00404 | 3.3E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.5E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.696 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 5.6E-22 | 89 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MVRGKIEIKK IENTTSRQVT FSKRRSGLFK KAHELSILCD AQVAAIIFSQ KGRLYDFASS 60 DIQKTIKRYA EYKRECFVAE SHPIEQYVQG LKKEMVTMVQ KIEMLEVHNR KLMGQGLGSC 120 SVKELQEITT QIEKSLHIVR SKKAKLYGDE VEKLKVKERE LKDERVRLYG RVGERPMGMP 180 PGSKEKEDVE TDLVIGFPKS GP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 1e-19 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-19 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-19 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-19 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
5f28_A | 1e-19 | 1 | 72 | 1 | 72 | MEF2C |
5f28_B | 1e-19 | 1 | 72 | 1 | 72 | MEF2C |
5f28_C | 1e-19 | 1 | 72 | 1 | 72 | MEF2C |
5f28_D | 1e-19 | 1 | 72 | 1 | 72 | MEF2C |
6c9l_A | 1e-19 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-19 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-19 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-19 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-19 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-19 | 1 | 72 | 1 | 72 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676791648 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ447061 | 0.0 | DQ447061.1 Arabidopsis thaliana clone pENTR221-At5g51860 MADS-box protein (At5g51860) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009107059.1 | 1e-131 | PREDICTED: MADS-box protein AGL72 isoform X1 | ||||
Refseq | XP_009107066.1 | 1e-131 | PREDICTED: MADS-box protein AGL72 isoform X1 | ||||
Refseq | XP_009107076.1 | 1e-131 | PREDICTED: MADS-box protein AGL72 isoform X1 | ||||
Refseq | XP_022575923.1 | 1e-131 | MADS-box protein AGL72-like isoform X5 | ||||
Swissprot | Q9FLH5 | 1e-120 | AGL72_ARATH; MADS-box protein AGL72 | ||||
TrEMBL | M4EHL7 | 1e-130 | M4EHL7_BRARP; Uncharacterized protein | ||||
STRING | Bra028282.1-P | 1e-130 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51860.2 | 1e-110 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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