PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676790852

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

G2-like

Protein Properties

Length: 1073aa MW: 121562 Da PI: 6.8702

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676790852	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.3	9.4e-30	98	152	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrW+++LH++Fv+ave+LGG++kAtPk+++e m+v+g++l+hvkSHLQk+Rl 676790852 98 KARLRWSSDLHDCFVNAVEKLGGPDKATPKAVKEKMEVEGIALHHVKSHLQKFRL 152 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.5E-25	95	152	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-12	97	152	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.6E-26	98	153	IPR006447	Myb domain, plants
Pfam	PF13966	7.8E-15	829	906	IPR026960	Reverse transcriptase zinc-binding domain
Pfam	PF13456	4.5E-6	995	1072	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1073 aa Download sequence Send to blast
MSSHELKNKE KGKEIVTSEE NPSISLHHVN HFDQPAEVSM YFSKQEIAAL LEANKDTHKA 60 NLEVEKCKKD SAEKGGMTEK KSSSSKITPC IFYTSDDKAR LRWSSDLHDC FVNAVEKLGG 120 PDKATPKAVK EKMEVEGIAL HHVKSHLQKF RLGKCNIRDE RGQYNKRYKT ARGIFKAYAA 180 SNLPRPQVNI KPKVVGAVKP KKTKEVNGSL YMLIEHDLHL QRCREAERMQ MIFATESNRK 240 MLEASNTCSM YEPQYVNSSV IHSTEGKAQF NNRQNYNMTQ GFINPHVTTQ PKSMPGSSTI 300 TTQQELQLKD VCLIHDSYRN PNFLPTAVPP TVESLHQGTS NVTFPFSTEP QSIQTYIPRR 360 TYNYPPYNTL EMVKTQLSAL QNSSTSRIQA TTSGETNLLS SITRDEEDPV DKYIDWGKVD 420 EVDIDELDPV EVLEALGFGD RSTFTDPQQR ARYHPYEDYS LRVSNRIYTK GGPLISWRPK 480 EYSASGQIGS RWDGGNSDQK GKPQSPDSQR TISTSYGVKH CHDREERTRR IKGKAPVTEA 540 SATTAKEKLS TIFQTQTSGK NQNTSPLEPG EIALENEKEA PLTDKEKGEV ETNMEEFEKE 600 QEKLIVNKKN SKVIDPKILG EQDADIVMDD TMIDNDDLLG EDLDEDGPID AEHIEALSQI 660 PPILLDIANG KEVAHDHNSR RNGKEGKEQN EETICSTPTK ASTKKKQLWR LMKYPDSLLA 720 RVLKGRYYRK SSPFDTGTVT TPSYGWRSMM AAKPLIFKGL RQTIGTGTET KVHHLIDFSS 780 KEWNRELLQA FISQEDIPRI LSIRPSKRLQ RDSVCWDHTK SELDSELGYR EVTETSINAL 840 KKQVWKVKTM RKIKHFLWQA LSGCVATTTN QNDRHCGIDK GCPWCGAPEE TINHLLFECP 900 PAIQAWALSS IPSSLGVFPS SSLYCNFDYL MWRPKETGTR QEDLAMFPWL IWYIWKAHNE 960 KVFKGAEIEE PVEENDTRII QSNPSPSTDL VRCQVDASWT YNAEMVGFGL VQIQANVITN 1020 VGLCARPNNR SPLHAELESL TWAMKKMIHQ GSLSVHFETD CAQLIQIING EEE

Sequence ? help Back to Top

Protein Sequence Length: 1073 aa Download sequence Send to blast

MSSHELKNKE KGKEIVTSEE NPSISLHHVN HFDQPAEVSM YFSKQEIAAL LEANKDTHKA  60
NLEVEKCKKD SAEKGGMTEK KSSSSKITPC IFYTSDDKAR LRWSSDLHDC FVNAVEKLGG  120
PDKATPKAVK EKMEVEGIAL HHVKSHLQKF RLGKCNIRDE RGQYNKRYKT ARGIFKAYAA  180
SNLPRPQVNI KPKVVGAVKP KKTKEVNGSL YMLIEHDLHL QRCREAERMQ MIFATESNRK  240
MLEASNTCSM YEPQYVNSSV IHSTEGKAQF NNRQNYNMTQ GFINPHVTTQ PKSMPGSSTI  300
TTQQELQLKD VCLIHDSYRN PNFLPTAVPP TVESLHQGTS NVTFPFSTEP QSIQTYIPRR  360
TYNYPPYNTL EMVKTQLSAL QNSSTSRIQA TTSGETNLLS SITRDEEDPV DKYIDWGKVD  420
EVDIDELDPV EVLEALGFGD RSTFTDPQQR ARYHPYEDYS LRVSNRIYTK GGPLISWRPK  480
EYSASGQIGS RWDGGNSDQK GKPQSPDSQR TISTSYGVKH CHDREERTRR IKGKAPVTEA  540
SATTAKEKLS TIFQTQTSGK NQNTSPLEPG EIALENEKEA PLTDKEKGEV ETNMEEFEKE  600
QEKLIVNKKN SKVIDPKILG EQDADIVMDD TMIDNDDLLG EDLDEDGPID AEHIEALSQI  660
PPILLDIANG KEVAHDHNSR RNGKEGKEQN EETICSTPTK ASTKKKQLWR LMKYPDSLLA  720
RVLKGRYYRK SSPFDTGTVT TPSYGWRSMM AAKPLIFKGL RQTIGTGTET KVHHLIDFSS  780
KEWNRELLQA FISQEDIPRI LSIRPSKRLQ RDSVCWDHTK SELDSELGYR EVTETSINAL  840
KKQVWKVKTM RKIKHFLWQA LSGCVATTTN QNDRHCGIDK GCPWCGAPEE TINHLLFECP  900
PAIQAWALSS IPSSLGVFPS SSLYCNFDYL MWRPKETGTR QEDLAMFPWL IWYIWKAHNE  960
KVFKGAEIEE PVEENDTRII QSNPSPSTDL VRCQVDASWT YNAEMVGFGL VQIQANVITN  1020
VGLCARPNNR SPLHAELESL TWAMKKMIHQ GSLSVHFETD CAQLIQIING EEE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-16	98	154	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-16	98	154	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-16	98	154	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-16	98	154	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-16	98	154	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-16	98	154	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-16	98	154	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-16	98	154	2	58	Protein PHOSPHATE STARVATION RESPONSE 1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676790852

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13406	15	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G06020.1	2e-64	G2-like family protein