PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676790314 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | GeBP | ||||||||
Protein Properties | Length: 120aa MW: 13792.7 Da PI: 10.4542 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 50.7 | 4.9e-16 | 63 | 116 | 3 | 55 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvk.ksisfkvsksqlv 55 ++r+w+eeDe+++L Gl+d++aktg++ + ++d+f++f+ +si +k+sk+ql+ 676790314 63 INRIWNEEDELTVLNGLVDYQAKTGVERKTNWDEFHHFLGgGSIAVKFSKDQLL 116 68************************************96369*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.2E-10 | 64 | 116 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MVNLRHLDFS DDFSPSSQSL FQRKSPWKHT SKPPPPSEPV LEQVTKKNKN KKKKNKKLAS 60 SVINRIWNEE DELTVLNGLV DYQAKTGVER KTNWDEFHHF LGGGSIAVKF SKDQLLSMKV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. May play redundant roles with GEBP and GPL1 in cytokinin responses by regulating the transcript levels of type-A ARR response genes. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893, ECO:0000305|PubMed:18162594}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676790314 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590206.1 | 2e-29 | PREDICTED: uncharacterized protein LOC106298614 | ||||
Swissprot | P0DKL0 | 1e-17 | STKLT_ARATH; GLABROUS1 enhancer-binding protein-like 2 | ||||
TrEMBL | A0A3N6RAV9 | 2e-28 | A0A3N6RAV9_BRACR; Uncharacterized protein | ||||
STRING | Bo6g064770.1 | 1e-28 | (Brassica oleracea) | ||||
STRING | Bo7g043690.1 | 2e-27 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6117 | 17 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25650.1 | 3e-18 | DNA-binding storekeeper protein-related transcriptional regulator |