PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676789994

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 1416aa MW: 158711 Da PI: 6.0738

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676789994	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.8	1.1e-09	24	73	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + rE+ RR+++N+ f eL +l k + + +K++Ka+iL+ +v+ +k+L 676789994 24 SQKAGREKLRREKLNEHFLELGNVLGKdP---DRPKNDKATILTDTVQLLKEL 73 566779*******************66...9999************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.9E-11	21	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.402	21	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.61E-7	22	77	No hit	No description
SuperFamily	SSF47459	9.16E-12	22	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-7	23	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.3E-8	27	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF48371	7.85E-8	371	501	IPR016024	Armadillo-type fold
SuperFamily	SSF48371	7.85E-8	538	656	IPR016024	Armadillo-type fold
SuperFamily	SSF48371	7.85E-8	778	932	IPR016024	Armadillo-type fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1416 aa Download sequence Send to blast
MCAHVPLIDP LCVHKVMDVS ARKSQKAGRE KLRREKLNEH FLELGNVLGK DPDRPKNDKA 60 TILTDTVQLL KELTSEVNKL KSEYTALTDE SRELTQEKND LREEKTSLKS DIENLNLQYQ 120 QRLRSMSPWG AAMDHTVMMA PPPSFPYPMP MAMPPGSIPM HPSMPSYPYF GNQNPSMMPA 180 PCTTYMPYMP PNTVVEQQSV HIPQNPSNRS REPRTKTSRE SRSEKAEDSN DVATQLELKT 240 PGSTSDKDTS SQRPEKTKRS KRNSNNNNSV EESSHSSKCS SSPSPHSNRT LGRRMTTMTP 300 EKTPARPLSI QDWDVLIEDF QDAGAPRDWF TAVFSTDSLV DFALSSLLKK EFPLQAKLSI 360 LVFLDEFSET LFDKCGNETF DRFIDALRAI VQSPTDGSSG LKEQAMISFT SVLVSIDSFS 420 VRHVEAVVDL LLALVNRPNH GFDRQARAIA CECLRQLERA FPGLLSDVAG HLWSLCQAER 480 THAVQAYLLL FTTVVYNVVN QKLGVSLLST SVPLVPFNAP NWIRDQSSVP GQGQSQGLGP 540 DQKELRRTLA FMLESPYLFT SCAMMEFMGM VVPLASALEL QASMLKVQFL GMIYSFDPML 600 CHVVLLMYSQ FPDAFEGQEK EIMRRLMLLS KETQIYLVFR LLALHWLMGL LNKLMLSGEL 660 GKRKSVLEMG QKFHPVVFDP LALKALKLDL LVQCSVSSNA LGGGDNSKSA GELLQECLES 720 VSDFKWLPPW SSETALAFRT LHKFLICAST HSDSDPSTTR SLMESSLFQN LQGLLVEMTL 780 KFEILVPVIV AFIERLINCQ KHQWLGERFL QTIDEKLLPK LEKNNLLTAY FPLFHRIAEN 840 DTIPPSRLIE LLTKFVVSLV DKRGFDVGLK LWDQGTEVLG ICRTLLSHHK SSRLFLGLSR 900 LLSLMCLYFP DLEVRDNARI YLRMLVCIPG RKIKNILKPA DTVSPSTHSS TFFTVQSPRF 960 RHDPNKSWNL SSYIHLERVT PLLVKQSWSL SLPSVGFGND GYSVIESKIQ VDEVEPESSQ 1020 ELQLLPDSRR IESGKPTLRV MDAKIAEILE RLRRYFSVIP DFRHMPGIKV RITCTLRLDA 1080 EPYSSIWESQ TQSTELDKVD TPPAIFATVL KFSSSAPYGS IPSCRIPFLL GEPHLDKNVP 1140 NDEGSLDIVL LENTRKEEEK DGLGGVPVTV ELEPREPTPG LVEVSMEANA ENGQMIQGIL 1200 ESVPVGIEDM FLKALAPPNV PEDTIPSYYS NLFNALWEVC GSSSSTAHET FALKGGKTAA 1260 AISGTRSVKL LEVPAETVIQ ASELHLAPFV VAITGEQLVN IVRDGGTIEN IVWQEEEEEE 1320 AQATADRSTS SSVGATGSNR CPLRLTYIGY GDDQQIPMTR SRGKMGKIKM LMFLPQRYHL 1380 LFEMEVGEGS TLVHIRTDYW PCLAYVDDYL EALFLH

Sequence ? help Back to Top

Protein Sequence Length: 1416 aa Download sequence Send to blast

MCAHVPLIDP LCVHKVMDVS ARKSQKAGRE KLRREKLNEH FLELGNVLGK DPDRPKNDKA  60
TILTDTVQLL KELTSEVNKL KSEYTALTDE SRELTQEKND LREEKTSLKS DIENLNLQYQ  120
QRLRSMSPWG AAMDHTVMMA PPPSFPYPMP MAMPPGSIPM HPSMPSYPYF GNQNPSMMPA  180
PCTTYMPYMP PNTVVEQQSV HIPQNPSNRS REPRTKTSRE SRSEKAEDSN DVATQLELKT  240
PGSTSDKDTS SQRPEKTKRS KRNSNNNNSV EESSHSSKCS SSPSPHSNRT LGRRMTTMTP  300
EKTPARPLSI QDWDVLIEDF QDAGAPRDWF TAVFSTDSLV DFALSSLLKK EFPLQAKLSI  360
LVFLDEFSET LFDKCGNETF DRFIDALRAI VQSPTDGSSG LKEQAMISFT SVLVSIDSFS  420
VRHVEAVVDL LLALVNRPNH GFDRQARAIA CECLRQLERA FPGLLSDVAG HLWSLCQAER  480
THAVQAYLLL FTTVVYNVVN QKLGVSLLST SVPLVPFNAP NWIRDQSSVP GQGQSQGLGP  540
DQKELRRTLA FMLESPYLFT SCAMMEFMGM VVPLASALEL QASMLKVQFL GMIYSFDPML  600
CHVVLLMYSQ FPDAFEGQEK EIMRRLMLLS KETQIYLVFR LLALHWLMGL LNKLMLSGEL  660
GKRKSVLEMG QKFHPVVFDP LALKALKLDL LVQCSVSSNA LGGGDNSKSA GELLQECLES  720
VSDFKWLPPW SSETALAFRT LHKFLICAST HSDSDPSTTR SLMESSLFQN LQGLLVEMTL  780
KFEILVPVIV AFIERLINCQ KHQWLGERFL QTIDEKLLPK LEKNNLLTAY FPLFHRIAEN  840
DTIPPSRLIE LLTKFVVSLV DKRGFDVGLK LWDQGTEVLG ICRTLLSHHK SSRLFLGLSR  900
LLSLMCLYFP DLEVRDNARI YLRMLVCIPG RKIKNILKPA DTVSPSTHSS TFFTVQSPRF  960
RHDPNKSWNL SSYIHLERVT PLLVKQSWSL SLPSVGFGND GYSVIESKIQ VDEVEPESSQ  1020
ELQLLPDSRR IESGKPTLRV MDAKIAEILE RLRRYFSVIP DFRHMPGIKV RITCTLRLDA  1080
EPYSSIWESQ TQSTELDKVD TPPAIFATVL KFSSSAPYGS IPSCRIPFLL GEPHLDKNVP  1140
NDEGSLDIVL LENTRKEEEK DGLGGVPVTV ELEPREPTPG LVEVSMEANA ENGQMIQGIL  1200
ESVPVGIEDM FLKALAPPNV PEDTIPSYYS NLFNALWEVC GSSSSTAHET FALKGGKTAA  1260
AISGTRSVKL LEVPAETVIQ ASELHLAPFV VAITGEQLVN IVRDGGTIEN IVWQEEEEEE  1320
AQATADRSTS SSVGATGSNR CPLRLTYIGY GDDQQIPMTR SRGKMGKIKM LMFLPQRYHL  1380
LFEMEVGEGS TLVHIRTDYW PCLAYVDDYL EALFLH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676789994

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB025631	0.0	AB025631.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MPN9.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006406446.1	0.0	AP-5 complex subunit beta-1
TrEMBL	A0A1J3E1D0	0.0	A0A1J3E1D0_NOCCA; AP-5 complex subunit beta-1 (Fragment)
STRING	XP_006406446.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11304	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.2	1e-137	bHLH family protein