PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676789926
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HB-PHD
Protein Properties Length: 899aa    MW: 100676 Da    PI: 5.1298
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676789926genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.25.8e-13619664853
                -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
   Homeobox   8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                t+  +++L + F++n+ p+ ++re LAk+l+++ +qV++WF N+R 
  676789926 619 TNPRTQRLLSSFQENPFPDITTRENLAKELQMNVKQVTNWFGNKRF 664
                5667899**************************************6 PP
2PHD39.31.5e-13265320151
                SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
        PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                +C+ Cg+   + +++++lCdg C++ fH++C++++l++e++p +  +wlC+ C++k
  676789926 265 FCAKCGSkdLHLDNDIILCDGfCDRGFHQNCVEPPLRKEDIPPDdeNWLCPGCDCK 320
                699***976667********88*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.44E-13255321IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.4E-12261319IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.136263320IPR019787Zinc finger, PHD-finger
PfamPF006284.9E-11265320IPR019787Zinc finger, PHD-finger
SMARTSM002491.9E-9265318IPR001965Zinc finger, PHD-type
CDDcd155043.55E-27265317No hitNo description
PROSITE patternPS013590266317IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007112.39609669IPR001356Homeobox domain
SuperFamilySSF466897.7E-13616668IPR009057Homeodomain-like
SMARTSM003891.2E-8618673IPR001356Homeobox domain
PfamPF000461.7E-10619664IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-12622671IPR009057Homeodomain-like
CDDcd000865.95E-10623663No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 899 aa     Download sequence    Send to blast
MQSGSRRRTR SSGLGLEQTN GDVTPTVDKL PQHSNASVPL QTPEAESHVK HFEESANGGN  60
MDNGKGISNG VSGEENVSTP EAGKKKTCNT KFSDSHREIV LGLPCRGQFE IHRSSRKPGR  120
GAKRNNANVS SHKRALRSRE AATSVEANPT PVNGLKKRKK YTRKEKEKVR EDDEYTIIKK  180
KLRYLLNRIN YEQSLIDAYS LEGWKGSSAE KLRPEKELER ATKEILRRKV KIRELFQHLD  240
TLCAEGSIPE SLFDSDGEIS SEDIFCAKCG SKDLHLDNDI ILCDGFCDRG FHQNCVEPPL  300
RKEDIPPDDE NWLCPGCDCK DHSLDLLNDS LGTKLSVSDS WEKVFPEAAA ALAGGDQNLD  360
CDLPSDDSDD EEYDPDGLND DENDEDGSDD SDESENEDRS SSESDSASAS ASASDEMIES  420
FKEAKYIMDL PSDDSEDDDY DPDAPIRDED RMQESSNSDN TSDSEDLETS SKGNVSDQQD  480
EVTPRGKPGR KKSQLPDISI SESDAGIDDG LLDVPARRKV ERLDYKKLYD EEYENVPTSS  540
SDDEDWDKIA GNEDFESADE GDTAPLKQPL KAEDHTSAQK PIHKQKRGSK RDTLKAPQEA  600
PGENGGSGKK SNSASYKQTN PRTQRLLSSF QENPFPDITT RENLAKELQM NVKQVTNWFG  660
NKRFSTSKKM ALKEDEKLDK GKDCEGKASV AGSSEQTMET ELVAENKSRA SESTDTGLRK  720
RRRRGLGNVL QKVEKMKKVL SVYGGVLRLV RLLPADTRPY YAKYARENFV NYREVDVSET  780
SLDELYQRAY NHSLWVLKKR QKRLKTSWPA LVFYGVVFFS SHTCLQYLHV SNLVHVITVV  840
LCEATVSAVN DKHDTERGKR KQQLLREKKV RNETSASSKS KTTVFSGQVA LTKFYLQIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155159KKRKK
2718722RKRRR
3796802LKKRQKR
Functional Description ? help Back to Top
Source Description
UniProtBinds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676789926
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013641428.10.0homeobox protein HAT3.1-like
RefseqXP_013641435.10.0homeobox protein HAT3.1-like
SwissprotQ049960.0HAT31_ARATH; Homeobox protein HAT3.1
TrEMBLA0A3P5ZFP40.0A0A3P5ZFP4_BRACM; Uncharacterized protein
STRINGBra038213.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72702543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-146Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]