PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676789730

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

WOX

Protein Properties

Length: 275aa MW: 30488.6 Da PI: 6.7991

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676789730	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	46.9	4.8e-15	28	88	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ 676789730 28 RSRWSPKPEQILILESIFNSgIVNPPKDETVRIRKMLekfgAVGDANVFYWFQNRRSRSRR 88 89***************99***********************************997 PP
2	Wus_type_Homeobox	106.3	1.8e-34	27	90	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P+peQi iLe++++sG+++P+k+e+ ri+++Le++G+++d+NVfyWFQNr++R+r++q 676789730 27 VRSRWSPKPEQILILESIFNSGIVNPPKDETVRIRKMLEKFGAVGDANVFYWFQNRRSRSRRRQ 90 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-8	6	89	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.42E-14	21	95	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.224	24	89	IPR001356	Homeobox domain
SMART	SM00389	2.7E-5	26	93	IPR001356	Homeobox domain
Pfam	PF00046	9.7E-13	28	88	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048830	Biological Process	adventitious root development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MDQEGSSQSP TGQGRSPSAP SNSTEPVRSR WSPKPEQILI LESIFNSGIV NPPKDETVRI 60 RKMLEKFGAV GDANVFYWFQ NRRSRSRRRQ RQLQAATAGA VTSRGAEEHQ HVTTMSMHHP 120 YSNSEIDLGF GSCSNSSANY FYNEPSSQVS SFLLGLSSSS SNGGCENNNG MGNLFTMYGH 180 ESDHHHHHQH NSNDASILRP SDQNSDFHYQ QGLMTVFING VPTEVTKGAI DMKAMFGEDL 240 VLLHSSGLPL PTDEFGFLMH SLQHGQAYFL VPRQT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676789730

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117910	0.0	AK117910.1 Arabidopsis thaliana At5g17810 mRNA for unknown protein, complete cds, clone: RAFL19-09-D18.
GenBank	BT006232	0.0	BT006232.1 Arabidopsis thaliana At5g17810 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009126209.1	1e-161	PREDICTED: WUSCHEL-related homeobox 12-like
Swissprot	Q8GY25	1e-129	WOX12_ARATH; WUSCHEL-related homeobox 12
TrEMBL	M4E4D5	1e-160	M4E4D5_BRARP; Uncharacterized protein
STRING	Bra023638.1-P	1e-161	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2819	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	1e-115	WUSCHEL related homeobox 12

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768]