PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676789704
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 354aa    MW: 40875.6 Da    PI: 4.47
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676789704genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-1819112198
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                ffk++ ++d +++ + ++p +f++++  +  +s++++l+ ++g sW vk+  +k+++ +++  +GW++F ++n L e++ ++F+++ +++f  +v +++
  676789704  19 FFKIFRREDLSSEIMRIIPHDFIRSIPDN-SSSFKMVLKVPWGSSWPVKI--SKNPCFHYMDdRGWNQFLNDNALGENEYLTFTHEANMCF--NVNIYE 112
                99************************766.5899****************..******666549*********************999***..777765 PP
2B339.51e-122122861797
                E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 +pkkf++ h+ k+  +++ ++     ++Wev +    ++ +  +++GW++ +++ gL +gD+++Fkl++   +e ++kv 
  676789704 212 EIPKKFVDMHMPKE--TRMFKILADGKNTWEVLY--LVTDIQSRFSAGWSRLARELGLVVGDVCTFKLIK--PTEILLKVS 286
                69*****9998664..45788889999*******..555555669**********************987..444566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-1714114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-1715119IPR015300DNA-binding pseudobarrel domain
CDDcd100171.19E-1617111No hitNo description
PfamPF023629.0E-1719112IPR003340B3 DNA binding domain
PROSITE profilePS5086312.40719114IPR003340B3 DNA binding domain
SMARTSM010195.6E-2119114IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-17196287IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-15196287IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.096196289IPR003340B3 DNA binding domain
CDDcd100174.38E-13197279No hitNo description
SMARTSM010191.5E-13199289IPR003340B3 DNA binding domain
PfamPF023622.0E-9211280IPR003340B3 DNA binding domain
SuperFamilySSF483713.74E-6286335IPR016024Armadillo-type fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MVRNNGFGQI MEEGDSPGFF KIFRREDLSS EIMRIIPHDF IRSIPDNSSS FKMVLKVPWG  60
SSWPVKISKN PCFHYMDDRG WNQFLNDNAL GENEYLTFTH EANMCFNVNI YEKDGIKREQ  120
RTSLYKNVKK EEIVSSSESS YPRLKKAESA VSRLKNKRQL NLGKKKAKET KKSKHNKKVK  180
VNTVCNDVEA GTSSLVPEFN LTIRKSHLLF VEIPKKFVDM HMPKETRMFK ILADGKNTWE  240
VLYLVTDIQS RFSAGWSRLA RELGLVVGDV CTFKLIKPTE ILLKVSRDDV DVDDDDDDDD  300
DNEDDEDDAF DDFEDDDGDD DDDDEDDDEE DDDEEVLLKC DLNYRTNESV TPLG
Cis-element ? help Back to Top
SourceLink
PlantRegMap676789704
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400343.11e-145B3 domain-containing protein At5g18000
SwissprotQ9FJG21e-132Y5800_ARATH; B3 domain-containing protein At5g18000
TrEMBLV4N7Z11e-144V4N7Z1_EUTSA; Uncharacterized protein
STRINGBostr.26527s0412.1.p1e-150(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.11e-128VERDANDI
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]