PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676789546
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 343aa    MW: 38378.6 Da    PI: 6.6703
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676789546genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.13.7e-32722091128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atk.....sgyWkatgkd 89 
                lp+G++F+Ptdee++ e+L++k+  +     + ++e+i +v di++++P++Lp  v+++ ++ +fF k +++y +g+rk+r +t+     s++W++tg++
  676789546  72 LPKGVKFEPTDEEVI-EHLEAKCGIDGskpnHFIQEFICSVnDINYTHPQNLP-GVNTDGTSAFFFNKVEQAYLKGQRKRRrITQsgkaeSARWRKTGRT 169
                799************.99****765553454334456777779**********.7788899*******************9666633333667******* PP

        NAM  90 kevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                k+v+  +g ++g+kk++v+yk   +  k+ek +Wv+h+y+l
  676789546 170 KPVML-NGVQKGCKKIMVLYKTgkKGLKAEKYNWVLHQYHL 209
                *****.999***********6423667899*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-3657227IPR003441NAC domain
PROSITE profilePS5100533.29872227IPR003441NAC domain
PfamPF023655.4E-1373209IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MLITLYGFVL VAKPKETLRR AWIVNGPWIA RNVKNASVSS DLQIEDCGAI INCPNCSYRI  60
DNSNVLSPWP GLPKGVKFEP TDEEVIEHLE AKCGIDGSKP NHFIQEFICS VNDINYTHPQ  120
NLPGVNTDGT SAFFFNKVEQ AYLKGQRKRR RITQSGKAES ARWRKTGRTK PVMLNGVQKG  180
CKKIMVLYKT GKKGLKAEKY NWVLHQYHLG TEEEDIGEYV VSKIMYQQQA QQEKNAGGSK  240
IFGVAEDEIA YDDVEIVVDP FVQGLENTPE PTFGSRVDEI AQVAGGLSVT EDISVSKKVE  300
GSSSLVEKKP NCWDFLIGSE NFLVSDLENA DLRSLPDIRF VRT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146150RKRRR
2147151KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMap676789546
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878606.11e-160SUPPRESSOR OF GAMMA RESPONSE 1 isoform X1
TrEMBLR0GYW91e-154R0GYW9_9BRAS; Uncharacterized protein
STRINGBostr.2902s0186.1.p1e-163(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50452651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14490.11e-155NAC domain containing protein 85