PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676789528
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 308aa    MW: 35141.5 Da    PI: 10.0622
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676789528genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.69.4e-1819110196
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                ffkvl ++d +++ +  +p +f+++++ k e s++++l+ ++g sW++kl  +k+++  y+ ++GW +F ++n L  ++ ++F+++g+++f   v +
  676789528  19 FFKVLRKEDLSSETMREIPQDFLQSISAK-EFSFKMVLKLPWGSSWRIKL--SKYRRFyYMEKNGWDQFLSDNALGNNELLTFTHKGNMRF--SVNI 110
                99*********************999755.799*****************..****99555669**********************99999..5544 PP
2B3413.3e-132262931686
                EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
         B3  16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                l +pkkfa  h+ k  e+++ ++ ++sg +sWev++    ++ +  ++ GW + v++ gL++gD+++F l+ 
  676789528 226 LGIPKKFAMVHMPK--EPTMFKIHHSSGkKSWEVTY--VVSDVQSRFSPGWVRLVRDLGLEVGDVCTFALIL 293
                67******999744..77799999988889******..666666679*********************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-1814114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.77E-1815118IPR015300DNA-binding pseudobarrel domain
CDDcd100172.37E-1517111No hitNo description
PROSITE profilePS5086313.3119114IPR003340B3 DNA binding domain
PfamPF023623.7E-1519110IPR003340B3 DNA binding domain
SMARTSM010192.0E-1919114IPR003340B3 DNA binding domain
SuperFamilySSF1019369.42E-18211299IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.194211305IPR003340B3 DNA binding domain
CDDcd100173.29E-13212292No hitNo description
Gene3DG3DSA:2.40.330.105.4E-16212301IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.9E-15214305IPR003340B3 DNA binding domain
PfamPF023629.5E-10226293IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAKNTCFGKI MEEGDKPGFF KVLRKEDLSS ETMREIPQDF LQSISAKEFS FKMVLKLPWG  60
SSWRIKLSKY RRFYYMEKNG WDQFLSDNAL GNNELLTFTH KGNMRFSVNI YQINCAEMLK  120
PKKSATIASS SRNKREQGNN VYIDVKEDER ESFSALSYPG SETAESTVGG RLKQKRKLNL  180
RKKKVEDAGN SKKMKVDTDC DGSEAGTWSL VPEFTITIRK SYILFLGIPK KFAMVHMPKE  240
PTMFKIHHSS GKKSWEVTYV VSDVQSRFSP GWVRLVRDLG LEVGDVCTFA LILPTEMVLS  300
VSKQGTPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170182RLKQKRKLNLRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00517DAPTransfer from AT5G18090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676789528
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121019.11e-157PREDICTED: B3 domain-containing protein At5g18090
SwissprotQ9FK611e-118Y5809_ARATH; B3 domain-containing protein At5g18090
TrEMBLA0A078HJ491e-156A0A078HJ49_BRANA; BnaA10g16730D protein
STRINGBra002132.1-P1e-154(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.11e-119B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]