PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676789428
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 311aa    MW: 35887.8 Da    PI: 6.7254
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676789428genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.26e-18117169456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                + +++ eq+++Le+ Fe  +++  e++ +LAk lgL+ rq+ +WFqNrRa++k
  676789428 117 KKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 169
                4568889*********************************************9 PP
2HD-ZIP_I/II128.23.5e-41115206192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekk+rl+ eqv++LE+sFe  +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlE+dy++Lk+++d lk++n++L +++++L++el 
    676789428 115 EKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDVLKSDNDSLLANNKKLHAELV 206
                  69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.44E-19102173IPR009057Homeodomain-like
SMARTSM003892.6E-17114175IPR001356Homeobox domain
PROSITE profilePS5007116.552115171IPR001356Homeobox domain
CDDcd000861.04E-15116172No hitNo description
PfamPF000463.2E-15117169IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-19119179IPR009057Homeodomain-like
PRINTSPR000311.1E-5142151IPR000047Helix-turn-helix motif
PROSITE patternPS000270146169IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5151167IPR000047Helix-turn-helix motif
PfamPF021834.5E-14171210IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MYMYEEERNN IVNNQEGLRL EMAFPQHGFM FQQLHEDNAH HLPSPNSLSS CPPHLFYGGG  60
GGGNYMMNRS MSFTGVSDHH HLTQKSPNTT NMNDQDQMGE EDNLSDDGSH MMLGEKKKRL  120
NLEQVRALEK SFELGNKLEP ERKMQLAKAL GLQPRQIAIW FQNRRARWKT KQLERDYDSL  180
KKQFDVLKSD NDSLLANNKK LHAELVALKK QDRKESAKIK RELAEASWSN NESTENNNNN  240
SDINHVNMIK DLFPSSIRSA ATTTTSAHID NQMVQDQGFC NMFNGIDETT SASYWAWPDQ  300
QQQHHNHHQF N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163171RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676789428
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293640.0AK229364.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-61-C06.
GenBankBT0440590.0BT044059.1 Arabidopsis thaliana unknown protein (At5g15150) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013680513.10.0homeobox-leucine zipper protein HAT7-like
SwissprotQ004660.0HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLA0A397XU220.0A0A397XU22_BRACM; Uncharacterized protein
STRINGXP_006400032.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.11e-151homeobox 3