PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676789270
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family CO-like
Protein Properties Length: 360aa    MW: 39971.1 Da    PI: 6.692
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676789270genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.22.5e-061052440
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
               + C+++ +   + +C+ ++ +lC +C  + H        H++v
  676789270 10 QACDTCRSAACTVYCRADSAYLCTNCDAQVHAAnrlasrHERV 52
               57******99*********************556788888776 PP
2zf-B_box35.42.2e-115297342
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                r+C+ +e+ ++ +fC+ +   lC  C +++H+       H++vp+
  676789270 52 VRVCESCERAPAAFFCKADAASLCTACDSQIHSAnplarrHQRVPI 97
               689*****************************66899999**9997 PP
3CCT68.61.6e-23291335145
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++e
  676789270 291 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRKE 335
                9*****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.822754IPR000315B-box-type zinc finger
SMARTSM003369.3E-9754IPR000315B-box-type zinc finger
CDDcd000215.13E-81254No hitNo description
PROSITE profilePS5011912.4435097IPR000315B-box-type zinc finger
PfamPF006434.0E-95297IPR000315B-box-type zinc finger
CDDcd000213.06E-105397No hitNo description
SMARTSM003361.2E-125597IPR000315B-box-type zinc finger
PfamPF062031.7E-17291333IPR010402CCT domain
PROSITE profilePS5101716.648291333IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009909Biological Processregulation of flower development
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MLKGASNWAQ ACDTCRSAAC TVYCRADSAY LCTNCDAQVH AANRLASRHE RVRVCESCER  60
APAAFFCKAD AASLCTACDS QIHSANPLAR RHQRVPILPI SGNSYGSMAT NHPSETTVTT  120
DLENRVVVGE EDEDKDEDEA EAASWLLPSS GKNSGNNNNN SQNNGFSVDD EYLDLVDYGS  180
SLDKQFTDQS NQYQQGYNVP QRSHGADGVV PLQVEERKGH MHHEQHNFQF GFTNVSSGPH  240
RSFNGSISHM VSLVPESATS DTTVSHPQSP AKGVTDQLPE PPTQMLSPMD REARVLRYRE  300
KKKTRKFEKT IRYASRKAYA ETRPRIKGRF AKRKEVDEEA DKAFSTMIMF ESGYGIVPSF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676789270
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2401010.0AC240101.1 Sisymbrium irio clone SIR-39M12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006400111.10.0zinc finger protein CONSTANS-LIKE 1
SwissprotO500550.0COL1_ARATH; Zinc finger protein CONSTANS-LIKE 1
TrEMBLA0A087G7H10.0A0A087G7H1_ARAAL; Uncharacterized protein
TrEMBLV4LD070.0V4LD07_EUTSA; Uncharacterized protein
STRINGA0A087G7H10.0(Arabis alpina)
STRINGXP_006400111.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21282670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15850.11e-157CONSTANS-like 1
Publications ? help Back to Top
  1. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]
  2. An C, et al.
    Mediator subunit MED25 links the jasmonate receptor to transcriptionally active chromatin.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(42): p. E8930-E8939
    [PMID:28973940]
  3. Ordoñez-Herrera N, et al.
    The Transcription Factor COL12 Is a Substrate of the COP1/SPA E3 Ligase and Regulates Flowering Time and Plant Architecture.
    Plant Physiol., 2018. 176(2): p. 1327-1340
    [PMID:29187570]