PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676789262

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

G2-like

Protein Properties

Length: 385aa MW: 43243.2 Da PI: 6.0326

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676789262	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.4	7.9e-34	28	82	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerFveav+qLGG +kAtPkti+++m+++gLtl+h+kSHLQkYRl 676789262 28 KPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 82 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.155	25	85	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.3E-32	26	83	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.33E-17	27	83	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.1E-24	28	83	IPR006447	Myb domain, plants
Pfam	PF00249	9.9E-11	30	81	IPR001005	SANT/Myb domain
Pfam	PF14379	2.9E-25	129	175	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MSLPSERHPF LRGNGTGDSG LILSTDAKPR LKWTPDLHER FVEAVNQLGG GDKATPKTIM 60 KVMGIPGLTL YHLKSHLQKY RLSKNLNGQT NSGLNKTSVM TMVEENTSDA DESHSESLSI 120 GPQPSINLPI SDALQMQIEV QRRLHEQLEV QRHLQLRIEA QGKYLQAILE KAQETLGRQN 180 LGPAGIEATK AQLSELVSKV SAEYPDSSFL EPKELQNLRH QQIQTSYPPP NSSLESCLTS 240 SDGTQKAPKM LENRLGLRTY LGDSTSEQKE IMEEPFFQRM ELTWAEEESL RENNKAYLST 300 MVVNNAEPRS SSSRRSPGRL TIGVGIQEHR EGSSNNGYTE ERFNENGEEC KFETRSRTAL 360 DLNAHEETYG TTRPKQFDLN GFSWN

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MSLPSERHPF LRGNGTGDSG LILSTDAKPR LKWTPDLHER FVEAVNQLGG GDKATPKTIM  60
KVMGIPGLTL YHLKSHLQKY RLSKNLNGQT NSGLNKTSVM TMVEENTSDA DESHSESLSI  120
GPQPSINLPI SDALQMQIEV QRRLHEQLEV QRHLQLRIEA QGKYLQAILE KAQETLGRQN  180
LGPAGIEATK AQLSELVSKV SAEYPDSSFL EPKELQNLRH QQIQTSYPPP NSSLESCLTS  240
SDGTQKAPKM LENRLGLRTY LGDSTSEQKE IMEEPFFQRM ELTWAEEESL RENNKAYLST  300
MVVNNAEPRS SSSRRSPGRL TIGVGIQEHR EGSSNNGYTE ERFNENGEEC KFETRSRTAL  360
DLNAHEETYG TTRPKQFDLN GFSWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-20	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-20	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-20	28	84	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-20	28	84	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-20	28	84	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-20	28	84	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-20	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-20	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-20	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-20	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-20	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-20	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676789262

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT003421	0.0	BT003421.1 Arabidopsis thaliana transfactor-like protein (At5g18240) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_197325.1	0.0	myb-related protein 1
Refseq	NP_974798.1	0.0	myb-related protein 1
Swissprot	Q9FK47	0.0	PHLA_ARATH; Myb-related protein 1
TrEMBL	D7LXT0	0.0	D7LXT0_ARALL; Uncharacterized protein
STRING	AT5G18240.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3336	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	0.0	myb-related protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]