PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676789228
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Nin-like
Protein Properties Length: 422aa    MW: 46755 Da    PI: 4.6646
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676789228genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK77.21.8e-24327377252
     RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                + +++l+d+s++F+lpi++AA+ L +c+Tv+K+iCR+ G++RWPhRkiksl
  676789228 327 TGKLKLKDISMHFHLPIEEAARRLSLCPTVVKKICRKGGLRRWPHRKIKSL 377
                56899********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.268308398IPR003035RWP-RK domain
PfamPF020422.3E-21330377IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MAGDESKSSA LEDNDDGEPY YDLFSEEEIL SLMSSPNPNL MNLAFTENPL PPLLPPPSTA  60
ATGINETGLL QQLSLSIPNC DTNDFLVSSL DEDSNLPWDM FDIPSDYLND DIDINILSEI  120
GNDSGNSVVG TGRLEASNRV VIENGENFET GGSSVPVPPS TPTISDGIHM CTCCNLLRTL  180
VHTNGQEMMR LDIHGGIGYF CHAILETQPL DGSTEPRHQT IHLKDLKMED VKMFIENYCT  240
ARAAAGFGVA QDTNADFYQA MNACSSDNQW LMWPLPPPDD VPMSQDMPDQ ALDVPSVPLY  300
VGLRDEPPAS KTRKRRQTPL AVQRERTGKL KLKDISMHFH LPIEEAARRL SLCPTVVKKI  360
CRKGGLRRWP HRKIKSLLNK VTALRKVLDT ATDVEVRARA EKEIERLVKR VTEICSEAVK  420
NA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311316TRKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap676789228
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022548753.10.0uncharacterized protein LOC111201326
TrEMBLA0A3P6CLG30.0A0A3P6CLG3_BRACM; Uncharacterized protein
STRINGBra008646.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40762342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17150.17e-12Nin-like family protein