PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676788946
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Trihelix
Protein Properties Length: 811aa    MW: 90065.4 Da    PI: 8.3014
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676788946genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix27.39.7e-094605054186
   trihelix  41 rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 g  +s++qC++k+e+l+kry+ +k+++  r  + ss++ +f  l+
  676788946 460 SGPPKSAIQCRHKIEKLRKRYRGEKQRSLTRPGKFSSSWDLFPVLD 505
                56679*************************99999*******9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF508914.09E-19163319IPR029000Cyclophilin-like domain
Gene3DG3DSA:2.40.100.101.5E-11164310IPR029000Cyclophilin-like domain
PfamPF001607.9E-10167309IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain
PfamPF138371.9E-8459507No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000413Biological Processprotein peptidyl-prolyl isomerization
GO:0006457Biological Processprotein folding
GO:0006979Biological Processresponse to oxidative stress
GO:0003755Molecular Functionpeptidyl-prolyl cis-trans isomerase activity
Sequence ? help Back to Top
Protein Sequence    Length: 811 aa     Download sequence    Send to blast
MGSRVSYAES LATSGCDKEY NQKKKSLVAS DSKTNRAIYS AKTNCDQQQF FNNLNLLENQ  60
GRVDGAGCCR GVDNLELWGP AVKWGTDFKF DKPEECCKAC KVMCSGNDGP CLCDSWVFCG  120
NKEACGSKFG ECWLKKQKDV LVPDKQEGGQ KVMWTSGLIF GQGEGIVGFE TEHGVLHVKL  180
HPECAPHSVY YILSLLTLRH CAGCQFHRAE KRGSYWDAEG NHINNAPYGP PYAMIQGILQ  240
PEGNMFTPIP TEHCPTISRG SVAWVGSGPE FFISLANHHE WKQSYTVFGS ILPEDMEVAE  300
RIAGLPTRAD VWNSVDVSVL EKPVSLTVRR MKSGQEQEEP GSVKRIRRRW RRCVGCAHVT  360
NSAAHFSTTL QPGHPPLLTF LTYASPPPLY YPLTHRSLFL LSLISSTPPP CQPPMMDLPS  420
PWPSILPPPS PSRQPRLGEF LLRAGPTKRP LRSSTPTKTS GPPKSAIQCR HKIEKLRKRY  480
RGEKQRSLTR PGKFSSSWDL FPVLDAMGFA PVTPAAVEPY DPDPDHDDES NGLDGFRVRS  540
KRSSAKFGGY SDSPRDGGDG YGVRSRSKSQ MKMYGGFKPE FDSDHDSGSG FGLKRRYNGN  600
PKVDFDADSD DEILLAPKTT RLKAASHGHG GGGGGGFPLK SFGDRSFGSH GGFSKSKNFI  660
KPEANFSPEM DFDDEFDDER EGFNPRVQQH SRSSSRVNGY TRKDGSYPRS NNNNNTGVSN  720
GYGSSSRFKH EQADVESDPI DEVVSSVKML TEMFVRVENS KMEMMREMEK TRMEMELKHC  780
QMMLESQQQI IGAFAEALSE KKSTNARRTV S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343351KRIRRRWRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap676788946
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0564380.0AY056438.1 Arabidopsis thaliana AT4g17070/dl4565c mRNA, complete cds.
GenBankAY1438910.0AY143891.1 Arabidopsis thaliana At4g17070/dl4565c mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3DMD40.0A0A0D3DMD4_BRAOL; Uncharacterized protein
STRINGBo8g046100.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.15e-09Trihelix family protein