PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676788622
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 707aa    MW: 78862.3 Da    PI: 6.6751
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676788622genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.5e-1955110156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                r++ +++t++q+ e+e++F+k+++p+ ++r+eL+++lgL+  q+k+WFqN+R++ k
  676788622  55 RKRHHRHTQHQILEMENYFKKCPHPDDKQRKELSRQLGLDHLQIKFWFQNKRTQTK 110
                567789***********************************************998 PP
2START165.44e-522344551206
                HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
      START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                ela +a+ el+++ +++ep+W++        +n+de++++f+ + +     +++ea++++++v+m++ + v  l+d++  W+  +a    +a t++++ s
  676788622 234 ELAVAAMGELMALTQVSEPLWKRGFngttLALNSDEYTRTFQNGLGsrpvgFRTEASKETAIVFMNHLDIVHRLMDVN-LWSVIFAgmvaRAVTHDTVLS 332
                57899******************99898889**********665559*******************************.****99999999999999999 PP

                T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HH CS
      START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hw 179
                g      g+l+lm+ e+q++splv+ R+ +fvRy++q+ +g w++vd+S+d+  ++ e      ++++pSg+lie++++g s+vtwvehv++++r + h 
  676788622 333 GvdgnfnGTLHLMTVEYQVPSPLVStRECYFVRYCKQHAEGLWAVVDISIDHLVPNLE----LNCRRRPSGCLIEQLPDGSSRVTWVEHVEVDDRGVvHD 428
                9******************************************************997....77888***************************9888** PP

                HHHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 180 llrslvksglaegaktwvatlqrqcek 206
                ++++l++sg+a ga++wvatlqrqce+
  676788622 429 MFKHLLNSGQALGANRWVATLQRQCER 455
                *************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.71E-1938113IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-1939106IPR009057Homeodomain-like
PROSITE profilePS5007116.66552112IPR001356Homeobox domain
SMARTSM003895.5E-1753116IPR001356Homeobox domain
PfamPF000467.9E-1755110IPR001356Homeobox domain
CDDcd000861.65E-1855113No hitNo description
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PROSITE profilePS5084835.948225458IPR002913START domain
SuperFamilySSF559612.7E-30227456No hitNo description
CDDcd088756.93E-105229454No hitNo description
SMARTSM002342.0E-46234455IPR002913START domain
PfamPF018521.7E-44235455IPR002913START domain
Gene3DG3DSA:3.30.530.202.1E-5338454IPR023393START-like domain
SuperFamilySSF559616.87E-13512696No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MEPTYVNNNN AYNNENRNNN NRNGGTSLGD EEFDSMNISE NQEDGSNQNP CSGKRKRHHR  60
HTQHQILEME NYFKKCPHPD DKQRKELSRQ LGLDHLQIKF WFQNKRTQTK NHQERIENLQ  120
LRVENNRLRA DNQRFRDALA NALCLKCGGH TAVGEMSFEE HHLRIENAAL TEEIRQLSVM  180
AAKYTGQAVM SYPLMSPPNQ APPFEPAMVP NGSIGNLSGA NVGVQDSDKP LVIELAVAAM  240
GELMALTQVS EPLWKRGFNG TTLALNSDEY TRTFQNGLGS RPVGFRTEAS KETAIVFMNH  300
LDIVHRLMDV NLWSVIFAGM VARAVTHDTV LSGVDGNFNG TLHLMTVEYQ VPSPLVSTRE  360
CYFVRYCKQH AEGLWAVVDI SIDHLVPNLE LNCRRRPSGC LIEQLPDGSS RVTWVEHVEV  420
DDRGVVHDMF KHLLNSGQAL GANRWVATLQ RQCERLAMMT ATNIPSIEPG GLLMVRNDAK  480
QSMLKLSERM SRGFFAGVTT STAEMWCNLS GYSGDRVRVM TRKNLDDPGS PVGLILSATY  540
SFWVPVPPIT VFDFLRDENN RIHWDVLFDK GNTQKLTQIA NGRDIRNCVS LIQNPNTSQS  600
KMMMVQESST DQTASFVIYA PIDVASIENI LNGGDSDNVA LLPSGFAILP DGTPKPEKGG  660
SLVNVGVQML VESVPSAILT FSSVATIEKL ILVAANKIKA YFSSQNF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676788622
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634261.10.0PREDICTED: homeobox-leucine zipper protein HDG2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A0D3BSS60.0A0A0D3BSS6_BRAOL; Uncharacterized protein
STRINGBo4g045920.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.30.0homeodomain GLABROUS 2