PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676788502 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | GeBP | ||||||||
Protein Properties | Length: 272aa MW: 30957.4 Da PI: 10.229 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 74 | 2.6e-23 | 66 | 153 | 5 | 98 |
DUF573 5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvk.ksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 ++w+eeDe+++L Gl+d++ k+g++p++++d+f++f+ +si +k+sk+ql+ Ki +LK+Kf +++ +g++ +++f lsk+iWg+ 676788502 66 KIWNEEDELTVLNGLVDYQGKRGVEPKSNWDEFHRFLGgGSIAAKFSKDQLLRKIGKLKRKFLVRMQS--QGNDHIW-----SEAFRLSKRIWGQ 153 79**********************************96369*************************99..7887444.....578********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.0E-16 | 66 | 152 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MVKPRHLDVS DDSSPSSKSL LRRISPRKHT FKPSPPSEPV PEQVTKKNKN KKKKKNKKLA 60 LPVIIKIWNE EDELTVLNGL VDYQGKRGVE PKSNWDEFHR FLGGGSIAAK FSKDQLLRKI 120 GKLKRKFLVR MQSQGNDHIW SEAFRLSKRI WGQKDSTHSL GEDEEPANHE PLSDNDDADE 180 SCALTDAFEA MVSRGLSDYQ KKSQLQKLMN LGSAKRKELS HEWKELCAEE VKFIIKKFRF 240 SVMLAEAADD NDFGVLSDGV ALKTLKRNKS VS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein, which specifically recognizes the GL1 enhancer sequence (PubMed:12535344). May be involved in leaf initiation (PubMed:12535344). May play redundant roles with GPL1 and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). May play a role in plant defense (PubMed:29192025). {ECO:0000269|PubMed:12535344, ECO:0000269|PubMed:21875893, ECO:0000269|PubMed:29192025, ECO:0000305|PubMed:18162594}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676788502 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by KNAT1. Not regulated by gibberellins. {ECO:0000269|PubMed:12535344}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590206.1 | 3e-82 | PREDICTED: uncharacterized protein LOC106298614 | ||||
Swissprot | Q9ASZ1 | 6e-60 | STKLO_ARATH; GLABROUS1 enhancer-binding protein | ||||
TrEMBL | A0A0D3CT54 | 2e-80 | A0A0D3CT54_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3N6RAV9 | 3e-80 | A0A3N6RAV9_BRACR; Uncharacterized protein | ||||
STRING | Bo6g064770.1 | 4e-81 | (Brassica oleracea) | ||||
STRING | Bo7g043690.1 | 3e-78 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6117 | 17 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00270.1 | 3e-57 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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