PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676788332
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family G2-like
Protein Properties Length: 294aa    MW: 32148.2 Da    PI: 7.267
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676788332genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.41.6e-334094155
    G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
               kprlrWt eLHerFv+av++LGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  676788332 40 KPRLRWTAELHERFVDAVTHLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRL 94
               79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-323796IPR009057Homeodomain-like
PROSITE profilePS5129411.9933797IPR017930Myb domain
SuperFamilySSF466898.78E-173995IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-244095IPR006447Myb domain, plants
PfamPF002491.6E-74292IPR001005SANT/Myb domain
PfamPF143791.1E-26138184IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MYSSIRSLPL DGGHVGEYHG PLDGTNLPGD ACLVLTTDPK PRLRWTAELH ERFVDAVTHL  60
GGPDKATPKT IMRTMGVKGL TLYHLKSHLQ KFRLGRQACK ESTENSKDAS CVAESQDTGS  120
SSSSSLRLAA QEQNEGYQVT EALRAQMEVQ RRLHEQLEVQ RRLQLRIEAQ GKYLQSILEK  180
ACKAFDEQAA TFAGLEAARE ELSDLAIKVS NSSQGTTVPF FDATKMMMMP SLSELAVAID  240
HKNNITTNCS VESSLTSNTN GSSVSAVSMK KRHRVDNVSV GYEAGWSMPS STIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-194096157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-194096157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-194096157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-194096157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00378DAPTransfer from AT3G24120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676788332
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0503550.0AY050355.1 Arabidopsis thaliana AT3g24120/MUJ8_3 mRNA, complete cds.
GenBankAY0884280.0AY088428.1 Arabidopsis thaliana clone 6626 mRNA, complete sequence.
GenBankAY0940460.0AY094046.1 Arabidopsis thaliana AT3g24120/MUJ8_3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_566744.10.0Homeodomain-like superfamily protein
SwissprotQ94A570.0PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A178VFD10.0A0A178VFD1_ARATH; Uncharacterized protein
STRINGAT3G24120.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35152561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.10.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]