PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 676788000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 154aa MW: 18287 Da PI: 9.773 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60 | 3.9e-19 | 37 | 91 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k+ ++t+eq++ Le+ F+++++++ +++ L k+lgL+ rq+ vWFqNr+a++k 676788000 37 KKKKKMTTEQIKLLERSFREDMKLDSDRKMNLCKELGLQPRQIAVWFQNRKARWK 91 78999*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 109 | 3.4e-35 | 37 | 128 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+++++eq+klLE+sF+e+ kL+++rK++l +eLglqprq+avWFqnr+AR+ktkqlE+ ye+L++++ +++e++ L++e +L++ ++ 676788000 37 KKKKKMTTEQIKLLERSFREDMKLDSDRKMNLCKELGLQPRQIAVWFQNRKARWKTKQLEHLYESLRQEFAVVSREKKLLQEELIQLKSMIR 128 59**************************************************************************************8876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.84E-19 | 23 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.763 | 33 | 93 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.8E-16 | 36 | 97 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.2E-16 | 37 | 91 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.13E-13 | 37 | 94 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-19 | 39 | 100 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 154 aa Download sequence Send to blast |
MVETQGGPLH EHYYTPPAMV ERIYGEASNS INGYDQKKKK KMTTEQIKLL ERSFREDMKL 60 DSDRKMNLCK ELGLQPRQIA VWFQNRKARW KTKQLEHLYE SLRQEFAVVS REKKLLQEEL 120 IQLKSMIREN GSSEKQQTWE KACSEAISAQ FQFK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00049 | PBM | Transfer from AT2G36610 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 676788000 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | DQ056569 | 5e-74 | DQ056569.1 Arabidopsis thaliana homeobox-leucine zipper family protein (At2g36610) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013635693.1 | 2e-79 | PREDICTED: homeobox-leucine zipper protein ATHB-22 isoform X2 | ||||
Refseq | XP_013709262.1 | 2e-79 | homeobox-leucine zipper protein ATHB-22 | ||||
Swissprot | Q4PSR7 | 2e-64 | ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22 | ||||
TrEMBL | A0A3P6BTB0 | 9e-80 | A0A3P6BTB0_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g034490.1 | 6e-79 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1660 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G36610.1 | 2e-53 | homeobox protein 22 |
Publications ? help Back to Top | |||
---|---|---|---|
|