PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676785262 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | bHLH | ||||||||
Protein Properties | Length: 306aa MW: 34185.9 Da PI: 7.9821 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.6 | 8.4e-17 | 73 | 125 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +hn++Er+RR++iNs f+ Lr++lP + kKls +++ + v+YI +Lq 676785262 73 KKLNHNANERNRRKKINSLFSSLRSCLPGC--DEPKKLSVPQTVSRSVKYIPELQ 125 6789*************************7..36666***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.332 | 72 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-16 | 73 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-17 | 73 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.20E-14 | 73 | 129 | No hit | No description |
Pfam | PF00010 | 3.6E-14 | 73 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.3E-13 | 78 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MCELGPQLLP SFGWASTGEY ENNYLVGDNH NNGTFLHFPV PKTYGVAHHQ TCSLEVSVSS 60 AGNGIDNNSV VVKKLNHNAN ERNRRKKINS LFSSLRSCLP GCDEPKKLSV PQTVSRSVKY 120 IPELQEQVKK LIQKKEDLLL RVTGQRERYV KPQPKVVASY VSTVFATKLG DSEVLVQISS 180 SKIRNFSIYN VLSGLEEDGF VLMDMSTRTA ILMHHKLQSI ETQQGQARDR KLRNLLPFEY 240 IYSIQDLEKE TPGEEFSLGL QPDNVKAVVV PMKRERRGDG GSPGEEEVVV VGEEAADQKI 300 ILVGNM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676785262 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by OBP3, auxin and salicylic acid (SA). Repressed by jasmonic acid (JA), UV LIGHT, and heat treatments. Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by high iron, low copper and low zinc treatments. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:12887587, ECO:0000269|PubMed:17516080}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013651482.1 | 1e-113 | transcription factor ORG3 | ||||
Swissprot | Q9M1K1 | 1e-98 | ORG2_ARATH; Transcription factor ORG2 | ||||
TrEMBL | A0A3P6B8B2 | 1e-111 | A0A3P6B8B2_BRACM; Uncharacterized protein | ||||
STRING | Bra014971.1-P | 1e-111 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM482 | 28 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 1e-101 | bHLH family protein |