PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676785214
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 230aa    MW: 25946.7 Da    PI: 7.469
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676785214genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.2e-115096354
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
               r+h+e+ErrRR+riNs +++Lr+ll         K +Ka+ L k+v+ ++ L
  676785214 50 RKHKEAERRRRERINSHLNKLRDLLSCT-----SKTDKATLLAKVVQRVRGL 96
               57*************************7.....6***********9988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.5574796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-95096IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-1251106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1151106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-1053102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.7E-5133209No hitNo description
SuperFamilySSF550218.39E-7133209No hitNo description
CDDcd048732.84E-6134200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MQPEITDQIL YSFLTGGFCA SSTTTPTTSS FYPFAIEDTI SQDKALAALR KHKEAERRRR  60
ERINSHLNKL RDLLSCTSKT DKATLLAKVV QRVRGLKQQT LEVSKEILPS ETDEISVLHL  120
EDCCNDDGRI IFKVSFCCED RPDLLQDLVE TLKSLQMGTL YADITTIGGR TRNELIVVAD  180
KEHHSVESVE VLQNALKSLL ERSNQSVMMG RGGVGERSKR RRPLDHIIMV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15061KHKEAERRRRER
25560ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMap676785214
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746408.11e-120putative transcription factor bHLH107
SwissprotQ9LET01e-111BH107_ARATH; Putative transcription factor bHLH107
TrEMBLA0A0D3BXG01e-119A0A0D3BXG0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CQJ61e-119A0A3P6CQJ6_BRAOL; Uncharacterized protein
STRINGBo4g112750.11e-119(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.11e-101bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]