PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676784516
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family CPP
Protein Properties Length: 451aa    MW: 50229.9 Da    PI: 7.162
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676784516genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.19.7e-1562101242
        TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                ++kgC+Ck+skClk+YC+Cfa+g+ C++ C+C dC N++e+
  676784516  62 KQKGCRCKQSKCLKLYCDCFASGVLCND-CHCADCYNNSEN 101
                89**************************.********9985 PP
2TCR475.1e-15146181439
        TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                +gC+Ck+ kClkkYCeCf+a++ Cs++CkC dC N 
  676784516 146 RGCKCKRIKCLKKYCECFQANVLCSDNCKCIDCGNV 181
                79*******************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.1E-1461101IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163428.61262183IPR005172CRC domain
PfamPF036382.6E-116398IPR005172CRC domain
SMARTSM011143.9E-14143184IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.5E-12146180IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MIGNADSGAI VSKKNPRELV VSESPHNREV PLFPPISRGE TSATPETKDN MYEEGIVTTW  60
RKQKGCRCKQ SKCLKLYCDC FASGVLCNDC HCADCYNNSE NSDVREAAML KVFDRNPNAF  120
NGNPPSFLID KQYKAATDSK LGLLSRGCKC KRIKCLKKYC ECFQANVLCS DNCKCIDCGN  180
VSGGVLPSVL PWSLNSRNLF EKNEKPENID NVNALGIIST NRHIVGFNSH DTADCMNYAL  240
ECSAQSSLQV YRRKRYQEPP EQWSSGPDSF GSMPGYSILN SLDSPMHSSP KLSYRKKRSR  300
LGYTKRVPDL GDISSLLLAA SESATPNAVN VPVLVELQSS LQDQNRICIK PDDKEDKVGI  360
ELPNESEIGI VEEYIQSCGK LIELIDAQYN GEVDSQCNGT KASSSREIDI YMEKERAVLE  420
TFRDCLQKYM KIGFMKGQFH SASTELNRNN A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-18581816121Protein lin-54 homolog
5fd3_B5e-18581816121Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676784516
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024015245.10.0protein tesmin/TSO1-like CXC 8
SwissprotQ700D01e-137TCX8_ARATH; Protein tesmin/TSO1-like CXC 8
TrEMBLD7L5L01e-166D7L5L0_ARALL; Predicted protein
STRINGAl_scaffold_0003_16831e-166(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148441520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16160.11e-132Tesmin/TSO1-like CXC domain-containing protein