PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676784470

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

NF-YB

Protein Properties

Length: 380aa MW: 41795 Da PI: 8.3807

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676784470	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	185.5	4.1e-58	20	115	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyveplk+yl+kyre+ege+ 676784470 20 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQKYREVEGER 115 89********************************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.4E-55	15	126	IPR009072	Histone-fold
SuperFamily	SSF47113	1.55E-40	22	124	IPR009072	Histone-fold
Pfam	PF00808	1.8E-27	25	89	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	5.0E-21	53	71	No hit	No description
PROSITE pattern	PS00685	0	56	72	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	5.0E-21	72	90	No hit	No description
PRINTS	PR00615	5.0E-21	91	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MADSDNDSGG HKDGGNASTR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF 60 ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP LKIYLQKYRE VEGERTTTGR 120 QGDKEGGGGG NGSSGGGGGG GGGGYNGGGA TTAGGGMYGG IVTMGHHHQG HVYGGGMHHT 180 QQIWENHIIR KKNMEQIRIR HVNLLSPYPA LTPLTRNGSS LDSQENTVCN LLQRIHQRLM 240 QEAFRLPSSC YFISSILLNV LTNETPQQTL ELSSLCRRYS LKNPRKKWKL SYVELTDLQP 300 HDIIDQILLR CIEKKRSQRS ESSASLELVA NPNEAMESKS ACIQHKPSNF NEIKAPGACY 360 KLFSPASIGY KESGHLSEYS

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MADSDNDSGG HKDGGNASTR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF  60
ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP LKIYLQKYRE VEGERTTTGR  120
QGDKEGGGGG NGSSGGGGGG GGGGYNGGGA TTAGGGMYGG IVTMGHHHQG HVYGGGMHHT  180
QQIWENHIIR KKNMEQIRIR HVNLLSPYPA LTPLTRNGSS LDSQENTVCN LLQRIHQRLM  240
QEAFRLPSSC YFISSILLNV LTNETPQQTL ELSSLCRRYS LKNPRKKWKL SYVELTDLQP  300
HDIIDQILLR CIEKKRSQRS ESSASLELVA NPNEAMESKS ACIQHKPSNF NEIKAPGACY  360
KLFSPASIGY KESGHLSEYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-46	14	110	1	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676784470

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189218	0.0	AC189218.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F13, complete sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM255	28	229

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	4e-87	nuclear factor Y, subunit B3