PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676783878
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 321aa    MW: 36156.4 Da    PI: 10.3842
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676783878genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.30.00015102124830
                HHHHHHHHHHHHHHHHHCTSCCC CS
        HLH   8 rErrRRdriNsafeeLrellPka 30 
                +Er +++++Ns ++eLr+ l +a
  676783878 102 MEREYVAQMNSEIDELRKRLNQA 124
                7****************998874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd003031.87E-7258314No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MERYKVIECT ITIIHLITSH NCRFTSHNYR FIKPVWYASK LWAQTNYKPI IRKENKSGAT  60
LLRGGRLDFS ISIGGGSLRR DPGGNTFQTM LTRRIIPVNL PMEREYVAQM NSEIDELRKR  120
LNQAAVEMKR VKTQVHRATS ASPENPVHRT NNFNNVPRLP GRENDAQYPS DYPGCSSPSF  180
GLHQARRRHL SSRMETSPRP SSKNAPPAPN ASSGKKGSFF HLKILPKAGG NKQKLATITF  240
HDKDETEIQH PHNDPLVIKL AIGDASVSRV LIDTGSSVDV IFRDTLCRMD IDFSEIEPIL  300
KPLIGFTGET TMTLCNIRLP V
Cis-element ? help Back to Top
SourceLink
PlantRegMap676783878
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-