PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676783758
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 531aa    MW: 62661.2 Da    PI: 9.272
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676783758genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13.1e-08133157327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 e Cr+++r+G C+yG +Ck +H+p
  676783758 133 VEDCRDYLRNGSCSYGRSCKHNHPP 157
                699********************96 PP
2zf-CCCH17.11e-05215236426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                ++C+ f+++G Ck G+ C + H 
  676783758 215 RNCK-FFQSGNCKKGSDCDYLHL 236
                78**.6666*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.8E-5130157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.911130158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5130157IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-6133157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4136155IPR000571Zinc finger, CCCH-type
SMARTSM003560.016174201IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.939174202IPR000571Zinc finger, CCCH-type
SMARTSM003560.021211237IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.868211238IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6214235IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4217235IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MKPRERTERR RKEYEKRIKR QDRRENSEKR IEEAKETDTR TYSLRTESRS MEESKGKDPD  60
LGASKSEVRT DRSRERDPSS REARRVKKLE QELTRDSHYS KTELNRFYQE NATQRNGSCS  120
YGRYRAWLAR TRVEDCRDYL RNGSCSYGRS CKHNHPPRNQ IINLMVPTSP YPVRVGVQDC  180
EFYLDTGRCR YGMTCLLNHP PNRVAWVRPK RVIQRNCKFF QSGNCKKGSD CDYLHLKDTA  240
PVRQATTESS SLAEKKNHNV NGQKNLHEQV QESQVREVEV KAQEQLRRDT KREKEQLHAQ  300
QQREGFTQQQ KQESPPPPQQ QHQSLVSQFH PVKNQYFFNR QMKKKEQLQA QLEQKMESQQ  360
QQEFTQQQQQ KSPPSPQQQQ SLISQLHCYS LVETLTDAVE TGTRDTNSDA LTELSSHLNK  420
CQQLLNFLSG SLRSKSMEMQ NVAAHDQHNH KVDAQGQDNI QEQRQRENIE WQRREAEKNV  480
QEHRQRDIDK EKREAEESLE EQRVEENRSV NALENQAEVR HGNTEVQKGE G
Cis-element ? help Back to Top
SourceLink
PlantRegMap676783758
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14832817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.27e-17zinc finger nuclease 3