PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676783426 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | B3 | ||||||||
Protein Properties | Length: 994aa MW: 112793 Da PI: 8.3151 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.6 | 6e-15 | 21 | 98 | 10 | 95 |
HHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++++ + +p f+ +h +k++++kt +l++ s +W+vk+ ++++ +++GW++F+ a++L++gD+vvF++++ + ++v+ 676783426 21 GFTNH-FDIPVAFFLKHLEKSNKGKTAKLRSdASETTWKVKI--DGRR----FSDGWEDFAVAHDLRVGDIVVFRHEE--DLVFHVT 98 55666.99*********667788999***997888*******..9998....9**********************655..4433655 PP | |||||||
2 | B3 | 57.2 | 3e-18 | 149 | 238 | 3 | 97 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 v++++++l+++ ++pk+fa +++ ++++++l++ + +sW++ l+++ +s+r+++++GW++F+ +ng k gD+++Fk+++ +e+++v+k+f 676783426 149 VVTVTASNLRRD--YIPKDFAVLNSLM--KKFEIVLMNDERESWTIDLRHEAYSDRFYMSRGWRSFCVSNGKKPGDMFTFKFVQ-NEETPVLKLF 238 566778888888..*******999877..5679************************************************999.5566898887 PP | |||||||
3 | B3 | 69.3 | 5.1e-22 | 273 | 361 | 5 | 96 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++ ++l+++ +++pkkfa ++g++ e++++ l++e+g sW++ l+++ +sgry++++GW++F+ ang k+gD++ Fkl++ +++++v+k+ 676783426 273 IVTVSNLSRDTVYIPKKFAVSNGLI--EKFEIDLMNEKGVSWTIDLRHEPYSGRYLMRRGWRSFCLANGKKAGDMFNFKLVR-NDEKPVLKF 361 5788999******************..6789*************************************************98.566678776 PP | |||||||
4 | B3 | 45.4 | 1.5e-14 | 453 | 528 | 12 | 87 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 + l lp +f++++g++k++ ++++ d+ g W++ l ++k+ ++ l+kG ++F++ ng+k g+++v++l+++ 676783426 453 PASKLNLPLEFTKRNGIIKKS-GKIKMIDRYGTNWSMSLLMNKNERGaLSLGKGVRGFCEVNGVKMGESFVLELVWE 528 556799*********999855.5****************996666666**************************996 PP | |||||||
5 | B3 | 70.1 | 3e-22 | 624 | 714 | 6 | 98 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++++l+++ l+lp +f++++g+k ++s +++l+de rsW + l+++k+s+++++t+GW++F+++ng ++g f+ Fkl++ ++++l+++v+ 676783426 624 VTASNLQEDSLSLPQEFTTSNGLK-RKSHKIVLTDEGERSWALDLRFNKSSDTFYITQGWRNFCEENGREAGGFFKFKLMK-NGETLLLHVCP 714 688999999************988.6788**************************************************99.56668999986 PP | |||||||
6 | B3 | 53.5 | 4.5e-17 | 743 | 835 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f++ ++++d+lks+rl++p f++e+g++k++ ++tl ++g + +l r +sgr+ l+kG k+F+kangLk g++++F+l++ +++++v++++ 676783426 743 FVTLTLTNDSLKSSRLYIPLLFLKENGMDKPG--MVTLLGKDGTRRLANL-LRESSGRMSLGKGLKDFAKANGLKMGESFTFELIW-ENATPVLSLL 835 7788899********************99766..8********9999999.69999******************************.7777887765 PP | |||||||
7 | B3 | 61.7 | 1.2e-19 | 845 | 938 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f++ +++ d++k++rl lp +f++e+g+++++ t+ l ++g +W +l r ++gr+ l+kGWk+F++angL+ g++++++ + +++++++++ + 676783426 845 FVTLTLTQDSFKNSRLGLPLPFMRENGMNEPG--TIALLGKDGTKWMANL-LRESQGRMSLGKGWKDFARANGLEIGESFTLESIC-EDGTPMLSLSS 938 7778899********************99665..8***************.6888888*************************777.88889888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.5E-21 | 9 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.94E-19 | 9 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.265 | 11 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.18E-15 | 12 | 98 | No hit | No description |
SMART | SM01019 | 4.2E-22 | 14 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-9 | 24 | 95 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-18 | 141 | 236 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-19 | 144 | 238 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.874 | 145 | 241 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.81E-16 | 147 | 239 | No hit | No description |
SMART | SM01019 | 3.7E-27 | 147 | 241 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.5E-17 | 148 | 238 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.2E-21 | 265 | 362 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-21 | 265 | 361 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.11E-17 | 269 | 363 | No hit | No description |
PROSITE profile | PS50863 | 14.635 | 269 | 365 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.6E-29 | 270 | 365 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-20 | 273 | 361 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.08 | 442 | 541 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.1E-12 | 442 | 530 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-12 | 443 | 530 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 9.4E-17 | 446 | 542 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-12 | 454 | 529 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.09E-12 | 455 | 532 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-20 | 613 | 714 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.1E-19 | 615 | 716 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.64E-17 | 619 | 714 | No hit | No description |
SMART | SM01019 | 1.3E-24 | 619 | 716 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 15.425 | 619 | 716 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.4E-20 | 621 | 714 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.9E-18 | 734 | 832 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-18 | 739 | 834 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.04E-15 | 742 | 835 | No hit | No description |
PROSITE profile | PS50863 | 12.139 | 743 | 838 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-16 | 743 | 834 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-25 | 743 | 838 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.0E-19 | 839 | 941 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-20 | 841 | 939 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.18E-16 | 844 | 936 | No hit | No description |
PROSITE profile | PS50863 | 15.538 | 845 | 940 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-18 | 845 | 937 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-27 | 845 | 940 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 994 aa Download sequence Send to blast |
MANQPLYSPI NPHFFQPLLP GFTNHFDIPV AFFLKHLEKS NKGKTAKLRS DASETTWKVK 60 IDGRRFSDGW EDFAVAHDLR VGDIVVFRHE EDLVFHVTAL GPSCCEIQYG EDSQEEDKIE 120 QLCDTTEKIS RKKRLKTEID SPTDQSCFVV TVTASNLRRD YIPKDFAVLN SLMKKFEIVL 180 MNDERESWTI DLRHEAYSDR FYMSRGWRSF CVSNGKKPGD MFTFKFVQNE ETPVLKLFPM 240 NYGDQHKLEK VPKQKRQEKE RDSLPDHSSF VAIVTVSNLS RDTVYIPKKF AVSNGLIEKF 300 EIDLMNEKGV SWTIDLRHEP YSGRYLMRRG WRSFCLANGK KAGDMFNFKL VRNDEKPVLK 360 FLPLNLSKLE PSDDTRQGLE FTEKEFLGVE ANRNDKSQGS CFKGSDKGDL PSAEPTNKAT 420 RKGKCSEANE TNIIKDENIT TRQNQFVTLT LTPASKLNLP LEFTKRNGII KKSGKIKMID 480 RYGTNWSMSL LMNKNERGAL SLGKGVRGFC EVNGVKMGES FVLELVWEDT VPDPVAVTFQ 540 TYLPTRIRTR PICEYSLYVY WRFLHVINTG YISTKKHPRK EEEGDDQDST VFSGEKKRVR 600 KSNSEAEVDS CPSSSDNSFL VAPVTASNLQ EDSLSLPQEF TTSNGLKRKS HKIVLTDEGE 660 RSWALDLRFN KSSDTFYITQ GWRNFCEENG REAGGFFKFK LMKNGETLLL HVCPTESTSD 720 GTQGDKDNRQ ICRDSTSLSQ NRFVTLTLTN DSLKSSRLYI PLLFLKENGM DKPGMVTLLG 780 KDGTRRLANL LRESSGRMSL GKGLKDFAKA NGLKMGESFT FELIWENATP VLSLLGTGFR 840 SQNRFVTLTL TQDSFKNSRL GLPLPFMREN GMNEPGTIAL LGKDGTKWMA NLLRESQGRM 900 SLGKGWKDFA RANGLEIGES FTLESICEDG TPMLSLSSTE SKSERMQQGE YCSKASEKVS 960 VSTEPSNGEK TNKDENNIEE RNNASSQSKT DSWH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 646 | 650 | KRKSH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676783426 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013603085.1 | 0.0 | PREDICTED: B3 domain-containing protein REM10 | ||||
Swissprot | P0DH85 | 0.0 | REM10_ARATH; B3 domain-containing protein REM10 | ||||
TrEMBL | A0A078HD71 | 0.0 | A0A078HD71_BRANA; BnaA09g41250D protein | ||||
STRING | Bo8g099610.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14490 | 15 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 0.0 | B3 family protein |
Publications ? help Back to Top | |||
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