PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676783426
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 994aa    MW: 112793 Da    PI: 8.3151
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676783426genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.66e-1521981095
               HHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3 10 vlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                ++++ + +p  f+ +h +k++++kt +l++  s  +W+vk+  ++++    +++GW++F+ a++L++gD+vvF++++  +  ++v+
  676783426 21 GFTNH-FDIPVAFFLKHLEKSNKGKTAKLRSdASETTWKVKI--DGRR----FSDGWEDFAVAHDLRVGDIVVFRHEE--DLVFHVT 98
               55666.99*********667788999***997888*******..9998....9**********************655..4433655 PP

2B357.23e-18149238397
                EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 v++++++l+++  ++pk+fa  +++   ++++++l++ + +sW++ l+++ +s+r+++++GW++F+ +ng k gD+++Fk+++ +e+++v+k+f
  676783426 149 VVTVTASNLRRD--YIPKDFAVLNSLM--KKFEIVLMNDERESWTIDLRHEAYSDRFYMSRGWRSFCVSNGKKPGDMFTFKFVQ-NEETPVLKLF 238
                566778888888..*******999877..5679************************************************999.5566898887 PP

3B369.35.1e-22273361596
                -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 ++ ++l+++ +++pkkfa ++g++  e++++ l++e+g sW++ l+++ +sgry++++GW++F+ ang k+gD++ Fkl++ +++++v+k+
  676783426 273 IVTVSNLSRDTVYIPKKFAVSNGLI--EKFEIDLMNEKGVSWTIDLRHEPYSGRYLMRRGWRSFCLANGKKAGDMFNFKLVR-NDEKPVLKF 361
                5788999******************..6789*************************************************98.566678776 PP

4B345.41.5e-144535281287
                HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
         B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                  + l lp +f++++g++k++  ++++ d+ g  W++ l ++k+ ++   l+kG ++F++ ng+k g+++v++l+++
  676783426 453 PASKLNLPLEFTKRNGIIKKS-GKIKMIDRYGTNWSMSLLMNKNERGaLSLGKGVRGFCEVNGVKMGESFVLELVWE 528
                556799*********999855.5****************996666666**************************996 PP

5B370.13e-22624714698
                ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                +++++l+++ l+lp +f++++g+k ++s +++l+de  rsW + l+++k+s+++++t+GW++F+++ng ++g f+ Fkl++ ++++l+++v+ 
  676783426 624 VTASNLQEDSLSLPQEFTTSNGLK-RKSHKIVLTDEGERSWALDLRFNKSSDTFYITQGWRNFCEENGREAGGFFKFKLMK-NGETLLLHVCP 714
                688999999************988.6788**************************************************99.56668999986 PP

6B353.54.5e-17743835197
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                f++ ++++d+lks+rl++p  f++e+g++k++  ++tl  ++g +   +l  r +sgr+ l+kG k+F+kangLk g++++F+l++ +++++v++++
  676783426 743 FVTLTLTNDSLKSSRLYIPLLFLKENGMDKPG--MVTLLGKDGTRRLANL-LRESSGRMSLGKGLKDFAKANGLKMGESFTFELIW-ENATPVLSLL 835
                7788899********************99766..8********9999999.69999******************************.7777887765 PP

7B361.71.2e-19845938198
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                f++ +++ d++k++rl lp +f++e+g+++++  t+ l  ++g +W  +l  r ++gr+ l+kGWk+F++angL+ g++++++ +  +++++++++ +
  676783426 845 FVTLTLTQDSFKNSRLGLPLPFMRENGMNEPG--TIALLGKDGTKWMANL-LRESQGRMSLGKGWKDFARANGLEIGESFTLESIC-EDGTPMLSLSS 938
                7778899********************99665..8***************.6888888*************************777.88889888765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-219116IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.94E-199109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.26511103IPR003340B3 DNA binding domain
CDDcd100171.18E-151298No hitNo description
SMARTSM010194.2E-2214103IPR003340B3 DNA binding domain
PfamPF023622.0E-92495IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-18141236IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-19144238IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.874145241IPR003340B3 DNA binding domain
CDDcd100172.81E-16147239No hitNo description
SMARTSM010193.7E-27147241IPR003340B3 DNA binding domain
PfamPF023626.5E-17148238IPR003340B3 DNA binding domain
SuperFamilySSF1019361.2E-21265362IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-21265361IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-17269363No hitNo description
PROSITE profilePS5086314.635269365IPR003340B3 DNA binding domain
SMARTSM010196.6E-29270365IPR003340B3 DNA binding domain
PfamPF023621.0E-20273361IPR003340B3 DNA binding domain
PROSITE profilePS5086310.08442541IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.1E-12442530IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-12443530IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.4E-17446542IPR003340B3 DNA binding domain
PfamPF023623.6E-12454529IPR003340B3 DNA binding domain
CDDcd100172.09E-12455532No hitNo description
Gene3DG3DSA:2.40.330.101.1E-20613714IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-19615716IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-17619714No hitNo description
SMARTSM010191.3E-24619716IPR003340B3 DNA binding domain
PROSITE profilePS5086315.425619716IPR003340B3 DNA binding domain
PfamPF023623.4E-20621714IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-18734832IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-18739834IPR015300DNA-binding pseudobarrel domain
CDDcd100176.04E-15742835No hitNo description
PROSITE profilePS5086312.139743838IPR003340B3 DNA binding domain
PfamPF023621.6E-16743834IPR003340B3 DNA binding domain
SMARTSM010192.7E-25743838IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-19839941IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-20841939IPR015300DNA-binding pseudobarrel domain
CDDcd100173.18E-16844936No hitNo description
PROSITE profilePS5086315.538845940IPR003340B3 DNA binding domain
PfamPF023621.8E-18845937IPR003340B3 DNA binding domain
SMARTSM010192.7E-27845940IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 994 aa     Download sequence    Send to blast
MANQPLYSPI NPHFFQPLLP GFTNHFDIPV AFFLKHLEKS NKGKTAKLRS DASETTWKVK  60
IDGRRFSDGW EDFAVAHDLR VGDIVVFRHE EDLVFHVTAL GPSCCEIQYG EDSQEEDKIE  120
QLCDTTEKIS RKKRLKTEID SPTDQSCFVV TVTASNLRRD YIPKDFAVLN SLMKKFEIVL  180
MNDERESWTI DLRHEAYSDR FYMSRGWRSF CVSNGKKPGD MFTFKFVQNE ETPVLKLFPM  240
NYGDQHKLEK VPKQKRQEKE RDSLPDHSSF VAIVTVSNLS RDTVYIPKKF AVSNGLIEKF  300
EIDLMNEKGV SWTIDLRHEP YSGRYLMRRG WRSFCLANGK KAGDMFNFKL VRNDEKPVLK  360
FLPLNLSKLE PSDDTRQGLE FTEKEFLGVE ANRNDKSQGS CFKGSDKGDL PSAEPTNKAT  420
RKGKCSEANE TNIIKDENIT TRQNQFVTLT LTPASKLNLP LEFTKRNGII KKSGKIKMID  480
RYGTNWSMSL LMNKNERGAL SLGKGVRGFC EVNGVKMGES FVLELVWEDT VPDPVAVTFQ  540
TYLPTRIRTR PICEYSLYVY WRFLHVINTG YISTKKHPRK EEEGDDQDST VFSGEKKRVR  600
KSNSEAEVDS CPSSSDNSFL VAPVTASNLQ EDSLSLPQEF TTSNGLKRKS HKIVLTDEGE  660
RSWALDLRFN KSSDTFYITQ GWRNFCEENG REAGGFFKFK LMKNGETLLL HVCPTESTSD  720
GTQGDKDNRQ ICRDSTSLSQ NRFVTLTLTN DSLKSSRLYI PLLFLKENGM DKPGMVTLLG  780
KDGTRRLANL LRESSGRMSL GKGLKDFAKA NGLKMGESFT FELIWENATP VLSLLGTGFR  840
SQNRFVTLTL TQDSFKNSRL GLPLPFMREN GMNEPGTIAL LGKDGTKWMA NLLRESQGRM  900
SLGKGWKDFA RANGLEIGES FTLESICEDG TPMLSLSSTE SKSERMQQGE YCSKASEKVS  960
VSTEPSNGEK TNKDENNIEE RNNASSQSKT DSWH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1646650KRKSH
Cis-element ? help Back to Top
SourceLink
PlantRegMap676783426
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603085.10.0PREDICTED: B3 domain-containing protein REM10
SwissprotP0DH850.0REM10_ARATH; B3 domain-containing protein REM10
TrEMBLA0A078HD710.0A0A078HD71_BRANA; BnaA09g41250D protein
STRINGBo8g099610.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144901522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]