PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676783420

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

WRKY

Protein Properties

Length: 285aa MW: 31212.5 Da PI: 10.0356

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676783420	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.1	5.6e-31	211	268	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dpk++ +tYegeH+h+ 676783420 211 DEYSWRKYGQKPIKGSPHPRGYYKCSSFrGCPARKHVERALDDPKMLLVTYEGEHRHH 268 9**********************9877**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	5.4E-16	158	207	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	2.8E-32	197	269	IPR003657	WRKY domain
PROSITE profile	PS50811	30.102	204	270	IPR003657	WRKY domain
SuperFamily	SSF118290	3.27E-26	207	269	IPR003657	WRKY domain
SMART	SM00774	6.5E-37	209	269	IPR003657	WRKY domain
Pfam	PF03106	9.7E-27	211	268	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MTVDIMRTPK MEDQTAMQEA ASQGLKSMEH LIRVLSNRPE DHNVDCSEIT DFTVSKFKKV 60 APPAPISAPA PVTNPASFAQ SHQQSVTLDF TRPTVFGAKT KSSEIVEFAS VSSNSSFMSS 120 AITGDGSVSK GSSIFLAPAP TAPVVSSAKP PLAGLPYRKR CFEHEHSENF SGKVSGSGNV 180 KCHCKRSRKN RMKKTVRVPA ISAKIADIPP DEYSWRKYGQ KPIKGSPHPR GYYKCSSFRG 240 CPARKHVERA LDDPKMLLVT YEGEHRHHQS AMHENISPSL VFGSV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-21	197	267	2	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676783420

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352990	0.0	AK352990.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-16-C05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_565574.1	1e-165	WRKY DNA-binding protein 17
Swissprot	Q9SJA8	1e-166	WRK17_ARATH; Probable WRKY transcription factor 17
TrEMBL	A0A178VWS7	1e-165	A0A178VWS7_ARATH; WRKY17
STRING	AT2G24570.1	1e-165	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2508	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24570.1	1e-153	WRKY DNA-binding protein 17

Publications ? help Back to Top
Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Ali MA, et al. Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis. J. Plant Physiol., 2018. 226: p. 12-21 [PMID:29689430]