PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676783394 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | B3 | ||||||||
Protein Properties | Length: 1542aa MW: 174951 Da PI: 8.4744 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.7 | 4.2e-13 | 20 | 98 | 13 | 94 |
TT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 13 sgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 + l++p +f++++ ++kk+++ +l+ ++s +W+v++ ++++ l++GW+eF+ an+L++g++v+ +++g+++f +v 676783394 20 HTDLMIPSDFFTKYiegrsMEKKNTTAELKSDSSSDITWKVQM--TGRR----LSEGWREFAVANNLQVGEVVLVRYEGEMRF--HV 98 4459************98766666666777777888*******..8888....9***********************998887..44 PP | |||||||
2 | B3 | 59.9 | 4.4e-19 | 179 | 267 | 4 | 94 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +l ++++l+++ l++p + ++++g++ + +++ l + rsW++ l+++k+s+++++++GW++F+++ng ++g f++Fkl+ + ++v+ 676783394 179 ALFTASSLRKDKLYIPQHVTSSNGLNR-QCRKIDLINGGERSWTLDLSFNKSSDTFYISRGWRNFCDENGQEAGSFIMFKLVANG-DTPVL 267 577889999999************996.567*************************************************99854.44555 PP | |||||||
3 | B3 | 44.6 | 2.6e-14 | 377 | 467 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f++ ++p+d+ +++ l lp f++e+g++k++ ++ + ++g++W l +++g + l+kG keFvkangL++g ++kl++ +++++v++++ 676783394 377 FVTFTLPPDYVTLSKLNLPQLFVRENGINKPG--EIYILGKDGKKWPTSL-LLNNRGFMSLGKGFKEFVKANGLESGF--TLKLIW-EDTTPVFSLC 467 6778899********************99766..8***************.67788899*****************95..566668.7777888877 PP | |||||||
4 | B3 | 64.6 | 1.5e-20 | 529 | 623 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f++ ++++d+++++rl+lp+kfa+e++++k ++++l ++g + + l+++k+++ + l++GWk F ++n+L+ gD++++kl++ +++++v++++ 676783394 529 FVTLTITPDSFRNCRLRLPRKFARENDINKL--RMISLLGRDGTKHQTMLKINKQGSDIALGSGWKVFTEENDLRIGDSFTLKLIW-EDRTPVLSLCP 623 788899********************99964..59***************99**********************************.88889999986 PP | |||||||
5 | B3 | 52.2 | 1.1e-16 | 684 | 777 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f++ ++++ +++++ l+lp +fa+e++++k ++++ l ++gr+W k++ ++k+ ++ l+kGW +F+kan+ k+gD++ +l+++ +++ ++++f 676783394 684 FVTLTIKPLSFEKCFLTLPAQFARENSMNK-SGMMTYLVGKDGRKWLTKIKQWNKG-TVGLAKGWIDFAKANNFKSGDSFRMELIWE-DGTRMLRLF 777 66777888899***************8886.7799***************888885.789*************************95.444455555 PP | |||||||
6 | B3 | 41.3 | 2.7e-13 | 811 | 899 | 3 | 94 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 + ++++ + ++l+lp +f++++g++k + ++t+ e+ + + +l ++g +vl++GW eF++ang+k g+++ ++++++ ++++++v 676783394 811 TLTLTPEDVRACMLILPSQFLKANGINKLG--KITILGENKMELSAYL--LSRDGIVVLEDGWDEFCEANGVKLGESFSLEFTNEqDKTSPMV 899 5556666677789************99766..7999999999999999..999999*************************998767777776 PP | |||||||
7 | B3 | 42.7 | 9.8e-14 | 962 | 1038 | 15 | 97 |
-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 15 rlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++p f+++h +g +e++t +l++ s +Wevk+ + + + lt+GWkeF a++L+ gD+++F+ +++++f +v+++ 676783394 962 KQTIPVAFFSKHlEGR-NEQTTAKLRSdASKITWEVKI--EDG-Q--KLTDGWKEFTLAHDLRIGDILIFRQEKDMTF--HVTLL 1038 459*********8444.456799999868889******..333.2..4***********************6555666..88765 PP | |||||||
8 | B3 | 69.6 | 4.2e-22 | 1087 | 1173 | 6 | 95 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + +++l+ + l lp++f++++g++++ + +++l++e+g+sW++ l +kksg++++++GW++F++angLk+gD +++kl++ +++lv++ 676783394 1087 VAPSTLRYDTLNLPRSFVKANGLETRLG-EIVLMNEKGKSWTLAL-KQKKSGTTYIRQGWRSFCRANGLKAGDLFILKLIQ-GGRTLVLR 1173 678899999*************998776.****************.58888899*************************98.55555655 PP | |||||||
9 | B3 | 56.3 | 5.7e-18 | 1227 | 1316 | 6 | 97 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +++ +l+ + l lp++f++ +g+k++++ ++ l++e+g+ W+ l+ + ++g++++++GW++F+ angLk+ +Fkl++r ++++v+++ 676783394 1227 VSPATLRYDKLNLPRSFVRVNGLKTRRG-EILLMNEKGKAWTSVLKQELCGGSTYIRGGWRSFCTANGLKTEGLYTFKLIQR-GKTPVLRLS 1316 5677788999***********9998776.****************99999999***************************95.555777765 PP | |||||||
10 | B3 | 66.5 | 3.9e-21 | 1374 | 1456 | 6 | 89 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +++++l+ + l lpk+f++e+++ + ++ ++ l++e+g sW+++l+ +++ g++++t+GW +F+ an+L++g f++Fkl++r + 676783394 1374 VTPSSLRDDKLNLPKSFVRENDIHEGCG-KILLMNEKGTSWTLNLKRKRSCGTVYITGGWTSFCWANELRAGSFFTFKLIKRGG 1456 678999999************9998777.****************98999999**************************98643 PP | |||||||
11 | B3 | 53 | 6e-17 | 1456 | 1539 | 14 | 99 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 g l lp +f+++hg++ e++++t+ d++g +W+ l+ +k ++r+ l +GW+eF +an +k+g++++ kl+++ ++ +v+k+++k 676783394 1456 GTLFLPVRFTKSHGIN--EGTKMTMLDKNGVKWSTDLRSEKIGDRVRLVGGWREFFEANSVKTGESIIVKLIWEGDKCCVLKFCSK 1539 6799**********99..6679***************************************************9888889998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.434 | 8 | 104 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.4E-14 | 8 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.49E-13 | 8 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 8.8E-14 | 11 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.7E-9 | 20 | 96 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.43E-9 | 23 | 99 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-18 | 168 | 272 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-18 | 172 | 274 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.325 | 176 | 272 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.62E-15 | 176 | 269 | No hit | No description |
SMART | SM01019 | 4.6E-27 | 177 | 273 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.7E-17 | 178 | 267 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.95E-12 | 375 | 468 | No hit | No description |
SuperFamily | SSF101936 | 1.92E-14 | 375 | 467 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-14 | 375 | 477 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.434 | 377 | 470 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-13 | 377 | 467 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-23 | 377 | 470 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.8E-22 | 522 | 629 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.51E-21 | 528 | 629 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.2E-19 | 529 | 623 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.11E-16 | 529 | 623 | No hit | No description |
PROSITE profile | PS50863 | 12.816 | 529 | 625 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-24 | 529 | 625 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.5E-18 | 674 | 781 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-17 | 680 | 778 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.3E-14 | 684 | 777 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.367 | 684 | 780 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.4E-22 | 684 | 780 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.89E-16 | 696 | 777 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.4E-15 | 802 | 892 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.42E-16 | 805 | 891 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.28E-10 | 808 | 891 | No hit | No description |
Pfam | PF02362 | 3.5E-12 | 809 | 899 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.63 | 809 | 903 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-16 | 809 | 905 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.3E-13 | 954 | 1041 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-21 | 961 | 1054 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.6E-9 | 963 | 1035 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.1E-15 | 963 | 1048 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.81E-10 | 964 | 1038 | No hit | No description |
PROSITE profile | PS50863 | 11.519 | 965 | 1041 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-21 | 1078 | 1174 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.63E-19 | 1079 | 1174 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 16.384 | 1082 | 1178 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.5E-28 | 1082 | 1178 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.4E-21 | 1086 | 1174 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.71E-18 | 1090 | 1174 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-17 | 1216 | 1316 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.55E-16 | 1218 | 1316 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.719 | 1222 | 1318 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-21 | 1223 | 1319 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-17 | 1226 | 1316 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 8.79E-14 | 1231 | 1315 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-19 | 1367 | 1455 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 15.072 | 1369 | 1466 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-18 | 1369 | 1457 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.45E-17 | 1371 | 1458 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.5E-19 | 1374 | 1457 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.44E-18 | 1374 | 1458 | No hit | No description |
CDD | cd10017 | 6.86E-16 | 1454 | 1537 | No hit | No description |
SuperFamily | SSF101936 | 3.92E-17 | 1454 | 1538 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-15 | 1457 | 1539 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.4E-12 | 1458 | 1540 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.165 | 1475 | 1539 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1542 aa Download sequence Send to blast |
MAESTLLHPQ FYHTLVSGFH TDLMIPSDFF TKYIEGRSME KKNTTAELKS DSSSDITWKV 60 QMTGRRLSEG WREFAVANNL QVGEVVLVRY EGEMRFHVSD LGSSCCTTLL KKRLYQRTQV 120 DFSSNDDDDD GDDDDDEGFN MWDAYGTEFQ RTKKVWKNNP EAEAEGVSSS PSDKSRFVAL 180 FTASSLRKDK LYIPQHVTSS NGLNRQCRKI DLINGGERSW TLDLSFNKSS DTFYISRGWR 240 NFCDENGQEA GSFIMFKLVA NGDTPVLSFS PTESRDDRNQ RDCSEASERE SLSTESPVLS 300 FCSTESIGIR RHRDCSETSE SEFLSTELSS EEENTEGDGS GNDCSSVESL VEIGKKKCSR 360 KRRVVSFSSY SPCHKRFVTF TLPPDYVTLS KLNLPQLFVR ENGINKPGEI YILGKDGKKW 420 PTSLLLNNRG FMSLGKGFKE FVKANGLESG FTLKLIWEDT TPVFSLCCPE STSDRVQEEY 480 FKAIDKRSLF IDPSKRDRIS KDENKKEESR SWERKTKGRY STPLSRKQFV TLTITPDSFR 540 NCRLRLPRKF ARENDINKLR MISLLGRDGT KHQTMLKINK QGSDIALGSG WKVFTEENDL 600 RIGDSFTLKL IWEDRTPVLS LCPSECSIER GGGGGACSKR NQEKSLPIEP NSCKDKNIND 660 DNSKEKNSRE ENSKDSTPSS QKQFVTLTIK PLSFEKCFLT LPAQFARENS MNKSGMMTYL 720 VGKDGRKWLT KIKQWNKGTV GLAKGWIDFA KANNFKSGDS FRMELIWEDG TRMLRLFHTE 780 SSSSKTHEKE SVSIEPASRD SSSAVQNRFV TLTLTPEDVR ACMLILPSQF LKANGINKLG 840 KITILGENKM ELSAYLLSRD GIVVLEDGWD EFCEANGVKL GESFSLEFTN EQDKTSPMVS 900 SQSLVRLFSM EVHEEDLYDG ALKRLDLQRK KKRLKNAREE YDVIIERAYD DEHQEKQRCR 960 SKQTIPVAFF SKHLEGRNEQ TTAKLRSDAS KITWEVKIED GQKLTDGWKE FTLAHDLRIG 1020 DILIFRQEKD MTFHVTLLGP SCCEIQYESC LEEEDNLGNI PKKKRVKSPR KETGSASLDP 1080 SCLVSNVAPS TLRYDTLNLP RSFVKANGLE TRLGEIVLMN EKGKSWTLAL KQKKSGTTYI 1140 RQGWRSFCRA NGLKAGDLFI LKLIQGGRTL VLRLSTTESE EEDGSEGDEV EESNLERMPK 1200 KKKVKKNPRK ETKFSSREDL SCFLAYVSPA TLRYDKLNLP RSFVRVNGLK TRRGEILLMN 1260 EKGKAWTSVL KQELCGGSTY IRGGWRSFCT ANGLKTEGLY TFKLIQRGKT PVLRLSSTES 1320 ESEEDSSDSD EEESLPVEPG SDDETNFEKI QRKKSPKGEA ESSSLYQSCY GANVTPSSLR 1380 DDKLNLPKSF VRENDIHEGC GKILLMNEKG TSWTLNLKRK RSCGTVYITG GWTSFCWANE 1440 LRAGSFFTFK LIKRGGTLFL PVRFTKSHGI NEGTKMTMLD KNGVKWSTDL RSEKIGDRVR 1500 LVGGWREFFE ANSVKTGESI IVKLIWEGDK CCVLKFCSKV KQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 928 | 935 | RKKKRLKN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676783394 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A087GRX6 | 0.0 | A0A087GRX6_ARAAL; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13780 | 13 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24650.1 | 0.0 | DNA binding;DNA binding;sequence-specific DNA binding transcription factors |