PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676783390
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 548aa    MW: 62482.8 Da    PI: 9.729
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676783390genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.41.7e-1515961098
               HHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3 10 vlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                + +g l++p  f+ ++  g  ++e++t++l++  s  +W+vk+      +++  t+GWkeF+ a++L++gD+++F+ +++++f  +v+vf 
  676783390 15 GF-HGHLTIPAAFLLKYieG--TNEHRTVKLRSdASKITWKVKI-----EDGHKVTNGWKEFALAHDLRVGDILIFRQEKDMNF--HVTVFG 96
               44.455***********743..4577899999968889******.....455679**********************6665666..999986 PP
2B358.61.1e-18140225594
                -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                 + +++l  + l++p +f+++  + + ++ +++l+de+grsW+++l  ++k+++ +++t+GW + ++ ngLk+gD +++kl++  +++lv+
  676783390 140 NVAPSTLHYDTLYFPMSFTRAG-LGTSCG-EVVLMDEKGRSWTFNL--KRKKDGiMYITGGWTSLCHVNGLKVGDLFTLKLIQ-GGRTLVL 225
                56788899999********655.555565.9***************..55555559*************************98.4554554 PP
3B374.11.6e-23261348493
                E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                + ++s +l+ + ++lpk+f++e+g++++++ ++ l++e+g sW ++l+ +++ g++++t+GW++F++angL++g f++Fkl+++ ++ lv
  676783390 261 ANITSATLRYDTMCLPKNFTRENGLDTRCG-EIFLMNEKGISWMLNLKRKNSCGTMYITRGWRSFCNANGLRAGSFFTFKLIQT-GGALV 348
                56789999******************9987.****************98888888**************************995.44344 PP
4B355.51e-17412505599
                -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                +++ +  +++rl lp  f++ hg+++e  +++t+ d++g +W+ +l+ +k++g  + l +GWkeF k+n ++ g++++ kl+++ ++++v+++++k
  676783390 412 TLKRSEVENSRLFLPVYFTRMHGINTE--TKMTMLDKNGVRWSTNLRSEKSGGDrIRLVGGWKEFFKSNCVEIGETIIVKLIWEGDKSCVLGFCSK 505
                45666777889************9954..58***************986665556*****************************9999***99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.534598IPR003340B3 DNA binding domain
CDDcd100172.90E-16695No hitNo description
Gene3DG3DSA:2.40.330.101.1E-237111IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-217105IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.9E-21898IPR003340B3 DNA binding domain
PfamPF023624.0E-111695IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-19132226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.86E-19133227IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.5E-22136233IPR003340B3 DNA binding domain
PROSITE profilePS5086314.551136231IPR003340B3 DNA binding domain
CDDcd100171.83E-16136227No hitNo description
PfamPF023621.6E-18138226IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-20251349IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.988258355IPR003340B3 DNA binding domain
SuperFamilySSF1019361.02E-19258352IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-29259355IPR003340B3 DNA binding domain
CDDcd100173.87E-20259350No hitNo description
PfamPF023626.5E-22261349IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.3E-17400504IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-18404498IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.1E-22408506IPR003340B3 DNA binding domain
PfamPF023629.0E-16408505IPR003340B3 DNA binding domain
PROSITE profilePS5086313.14408506IPR003340B3 DNA binding domain
CDDcd100171.26E-14412503No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MRMVDKHFFK PLLPGFHGHL TIPAAFLLKY IEGTNEHRTV KLRSDASKIT WKVKIEDGHK  60
VTNGWKEFAL AHDLRVGDIL IFRQEKDMNF HVTVFGPSCC EIQYESCLED ENNLGKIPKK  120
KKVKKNPRKQ RESTSCFVLN VAPSTLHYDT LYFPMSFTRA GLGTSCGEVV LMDEKGRSWT  180
FNLKRKKDGI MYITGGWTSL CHVNGLKVGD LFTLKLIQGG RTLVLRLSTI KSEEIQRKKK  240
VKKNPKRETK SSSLDSSSFV ANITSATLRY DTMCLPKNFT RENGLDTRCG EIFLMNEKGI  300
SWMLNLKRKN SCGTMYITRG WRSFCNANGL RAGSFFTFKL IQTGGALVLR KCPFSNKSEG  360
EECSEGDEIE SLSTESDSEE ESNQDEKSFK KPRSVWKASS SSPSQNLFVA LTLKRSEVEN  420
SRLFLPVYFT RMHGINTETK MTMLDKNGVR WSTNLRSEKS GGDRIRLVGG WKEFFKSNCV  480
EIGETIIVKL IWEGDKSCVL GFCSKDFECG ICEESENTSD VVYKITYSLY LRLNNPRVYK  540
NKTREKHG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235242QRKKKVKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676783390
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484682.10.0PREDICTED: B3 domain-containing protein REM14-like
SwissprotQ8GYM40.0REM14_ARATH; B3 domain-containing protein REM14
TrEMBLV4LRK30.0V4LRK3_EUTSA; Uncharacterized protein
STRINGXP_006405006.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-177B3 family protein