PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676783378
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 363aa    MW: 41270.7 Da    PI: 10.1273
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676783378genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.47.3e-15693198
               EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
               ffk l     ++s+ l++p  f++++ +g   ++ t +l++  s+ +W+vk+  + ++    lt+GWkeF  a++L+ gD+v+Fk ++++ f  +v++f 
  676783378  6 FFKPL--LPDFQSH-LTIPVAFFSKFiEGT--NQNTAKLRSdASNITWDVKI--EDGR---KLTDGWKEFTLAHDLRIGDIVIFKQEKDMAF--HVTLFG 93
               77777..6778888.********9997544..3458888876889*******..4444...39**********************7776777..998875 PP
2B373.52.6e-23139223493
                E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                vl  +++   + l lpk+fa+++g++++ + +++l++e+g++W++ l+  k+ g +++++GW++F++angLk+gD+++Fkl++r +++lv
  676783378 139 VL--PSTIHYDALNLPKSFARANGLETRWG-EIVLMNEKGKTWTLALK-HKQCGNTYIRGGWRSFCSANGLKVGDSFTFKLIKR-GGTLV 223
                44..55566677***********9997665.****************5.444445889***********************995.44333 PP
3B353.44.6e-17266356195
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                f++ ++++++ k+  + lp +f++ hg+    +++++l d++g +W+ kl  r  ++r+ l++GWk+F kan +k g+++++kl++++++++v+k
  676783378 266 FVTLTLSPYSYKKYVMFLPQPFTDLHGIT--VGTKMSLLDKNGVKWSTKL--RSEGKRIRLGGGWKDFFKANSVKIGESIMLKLIWEEDTSCVLK 356
                667778899999999********999876..4569***************..999999****************************999888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.26E-193101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.9E-223106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.393395IPR003340B3 DNA binding domain
CDDcd100174.15E-15492No hitNo description
SMARTSM010192.4E-20695IPR003340B3 DNA binding domain
PfamPF023622.1E-10692IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-24126224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-21132227IPR015300DNA-binding pseudobarrel domain
CDDcd100171.46E-21134225No hitNo description
PROSITE profilePS5086315.58134230IPR003340B3 DNA binding domain
SMARTSM010195.6E-28135229IPR003340B3 DNA binding domain
PfamPF023623.0E-22138223IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-17258354IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-18262353IPR015300DNA-binding pseudobarrel domain
CDDcd100174.50E-13265357No hitNo description
PROSITE profilePS5086313.521266361IPR003340B3 DNA binding domain
SMARTSM010191.5E-20266361IPR003340B3 DNA binding domain
PfamPF023621.5E-15266357IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MANKHFFKPL LPDFQSHLTI PVAFFSKFIE GTNQNTAKLR SDASNITWDV KIEDGRKLTD  60
GWKEFTLAHD LRIGDIVIFK QEKDMAFHVT LFGPSCCEIQ YELCLDYEKT IGKIPKKKNP  120
KRAGESSSSL DPSCFLAKVL PSTIHYDALN LPKSFARANG LETRWGEIVL MNEKGKTWTL  180
ALKHKQCGNT YIRGGWRSFC SANGLKVGDS FTFKLIKRGG TLVLRKSPSH TESKEEECSE  240
ESNQDEKSKK RISLWKASSS PSRNRFVTLT LSPYSYKKYV MFLPQPFTDL HGITVGTKMS  300
LLDKNGVKWS TKLRSEGKRI RLGGGWKDFF KANSVKIGES IMLKLIWEED TSCVLKFWSI  360
VKP
Cis-element ? help Back to Top
SourceLink
PlantRegMap676783378
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746597.10.0B3 domain-containing protein REM14-like
SwissprotO230761e-105REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLA0A0D3B4F40.0A0A0D3B4F4_BRAOL; Uncharacterized protein
STRINGBo3g025330.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-104B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]