PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676783188 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | HB-other | ||||||||
Protein Properties | Length: 1125aa MW: 127562 Da PI: 7.6373 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.1 | 2.7e-07 | 46 | 81 | 21 | 56 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++yp+ +e+ +L k+lgLt + V+ WF+ rR +k 676783188 46 EQMYPTPKEMDDLGKSLGLTVKEVRGWFKRRRCTRK 81 589*****************************8777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-7 | 5 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.03E-6 | 45 | 81 | No hit | No description |
Pfam | PF00046 | 8.1E-5 | 46 | 81 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.11E-5 | 46 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.896 | 49 | 83 | IPR001356 | Homeobox domain |
Pfam | PF15612 | 1.1E-8 | 599 | 642 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 6.2E-11 | 743 | 816 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1125 aa Download sequence Send to blast |
MKMKSAVQLQ ALEGFYLALQ DIYLGLCLSG GGFYVSDGFF VYVNLEQMYP TPKEMDDLGK 60 SLGLTVKEVR GWFKRRRCTR KEVKSLAKNP QPYNRSHTRS SSSSRCDFGE AVGIRKITCQ 120 KLLTSQHILA KIFRKDGPSL GCEFDHLPAG ARKASWLGSS SLHQQKERVA RKRKISELME 180 HTSQDCVEKN ATVKKHGIGK GFMTVWRVMN PNSRDASLHE RATLAQSSAR NPPHQKKNQR 240 QLASILKQKL LQKRSREKKR CSINREVELN KDEAQLAFKE KCELGVDGKK ETCQTISILV 300 DDEELEMRER QEGASPLTCS CHTTSSGSHG CFLCKDLLPK FPPNSVQMRL PFGLHPWNYS 360 PESVKKLFKL LLLDVETELQ RGSFSNLSIS CKFLALLQSV ESQILILDMW KDSLNSLTWT 420 EILRQILVAA GFGSEKCAGQ SEELSKESRL MKKYGLRLGT LKGELFRMLN EQGNNGLKIS 480 ELANAAEVVA QNLASTSEER ERSLCSTLAS DITIFEKISE CTYRVRVSCL SEDPDKSQSD 540 SDESGSVDDE AGDCLFSSGD ENERVSEDFA LRKVKCRKRR KHKSKMLEVC SEIDESHPGQ 600 PWLLGLMEGE YSDLSIEEKL DVFVALIDLL SSGSTIRMEE MNFSYFSITA MSLVRRANLY 660 LVPQDLPRSM VDCVPSIYSR SGGKIKRSSS NQYSYPRVSW VHGGDRIEEL SKSSDSHPID 720 SSSILGGFAK FAGDKANNVH PMQSVYLGSD RRFNRYWLFL GPCSANDPGH RCVYFESSED 780 GHWEVISNKE ALRALLSVLD DRGRREARLI ESLEKRESFL CQAMLSRIDH FTDVVREDSS 840 SPVSDIDNNL CLNEIANDQF SSQHAAIIFE IGSKREKSLL WSLVQEFDEW IWANFNLNLN 900 AVKHSRRSYL DSLTRCKSCH DLYWRDEKHC KICHATFELE VDLEERYAIH AATCRKNEES 960 DTFPDHKVLS SQLQSLKAAM YAIESTMPED ALIGAWKKSA HRLWAKRLRR SSTLSEITQV 1020 IGDFVRAINE DWLWHFGDEE HSNTSLGEVI TSFSSMPQTT SAMALWLVKL DTLVAPYVEK 1080 PQPGRNQLCR TRNTTISGFH IFDNLVGERQ SRSCSSHLDI MEGHR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676783188 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL049640 | 1e-171 | AL049640.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T20K18 (ESSA project). | |||
GenBank | AL161534 | 1e-171 | AL161534.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34. | |||
GenBank | CP002687 | 1e-171 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024005575.1 | 0.0 | homeobox-DDT domain protein RLT3 isoform X1 | ||||
Swissprot | F4JRF5 | 0.0 | RLT3_ARATH; Homeobox-DDT domain protein RLT3 | ||||
TrEMBL | V4MLN1 | 0.0 | V4MLN1_EUTSA; Uncharacterized protein | ||||
STRING | Bostr.2021s0009.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9638 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12750.1 | 0.0 | Homeodomain-like transcriptional regulator |