PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676782724
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family CO-like
Protein Properties Length: 411aa    MW: 48167 Da    PI: 6.8335
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676782724genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.25.1e-0696140240
   zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 
                ++r C+++  k++ ++C +++ +lC+ C ++ H        H++v
  676782724  96 RPRDCELCLTKHAVWYCASDDAFLCHVCDSSVHCAnqvatkHERV 140
                5788****************************9655677777765 PP
2CCT66.95.4e-23363406144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                Rea++ RY++Krk+R+FeKkirYe+RK++A++RpR+KGrFv+++
  676782724 363 REARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRRS 406
                9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.7E-595142IPR000315B-box-type zinc finger
PROSITE profilePS501199.8495142IPR000315B-box-type zinc finger
CDDcd000216.91E-8100142No hitNo description
PfamPF062031.4E-17363405IPR010402CCT domain
PROSITE profilePS5101715.944363405IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MVEMREHIVR EKDLNRRLSK LNNTVRLIET YRFIFFLQWN STVSFAFVQT NKNGYGHTRT  60
HLNNTPKSFT SSVSIALTLT LYIKVMIPEH QEDVKRPRDC ELCLTKHAVW YCASDDAFLC  120
HVCDSSVHCA NQVATKHERV CLKTNEISND VLQGTTSKTV WHSGFRRKAR TPRNRCEKKP  180
QQKIDDERRR EDPCVPEIGG EAMFFIPETN EDDEDLTSLV PEFQGFIELE LFLSNHDGSE  240
ETMRQYNFED ETDALEDLCY NEEEGKTDGD EACPEQSLIS CKKDYDNVIA VTAKTEDSEN  300
YESNAKQRNM LLRLNYENVI AAWDKQESPR EATRNLSEFI NTSNFQLVPP GIEEKKVSSR  360
SEREARVWRY RDKRKNRLFE KKIRYEVRKV NADKRPRMKG RFVRRSLTND S
Cis-element ? help Back to Top
SourceLink
PlantRegMap676782724
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010479338.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 8-like isoform X1
SwissprotQ9M9B31e-178COL8_ARATH; Zinc finger protein CONSTANS-LIKE 8
TrEMBLE4MWV90.0E4MWV9_EUTHA; mRNA, clone: RTFL01-13-C12
TrEMBLV4KHE50.0V4KHE5_EUTSA; Uncharacterized protein
STRINGXP_010479338.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150481517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49130.11e-171B-box type zinc finger protein with CCT domain