PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676782636
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family G2-like
Protein Properties Length: 354aa    MW: 39885.1 Da    PI: 7.6152
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676782636genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.6e-32213268156
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                k+r++WtpeLH+rFv+a++qLGG+ +AtPk+i+e+mk +gLt+++vkSHLQkYRl+
  676782636 213 KQRRCWTPELHRRFVDALQQLGGPGVATPKQIREHMKEEGLTNDEVKSHLQKYRLH 268
                79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.387210270IPR017930Myb domain
SuperFamilySSF466895.29E-18211271IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-28212271IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-26213268IPR006447Myb domain, plants
PfamPF002497.6E-9215266IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGSLGDELSL GTRRHSSVPI TIGGFSRKAY SKKIINVAFK HVEKLEEEKR KIQSSELELP  60
LCLQILNDVI SYLKEEEDKR CSEVVDTQPL LKDFISINQP IREGDGQLLK REELVKEKKF  120
QLWRENDHGG FSDTKVKHML EIERSEEKSS NGLSMLLNPS MMRTPKVETG LGLGLTSISM  180
VNGRRKGIVA SCDFTSNSVP QPPAFLQQQA LRKQRRCWTP ELHRRFVDAL QQLGGPGVAT  240
PKQIREHMKE EGLTNDEVKS HLQKYRLHIR KPNTNPEKQS VVVLGFNLWN SSQEEEVTGE  300
GVESSSKRSN SQSNSPQGPL QVPSTTTTTG GDSSMEDAED DKSESFQMER LRSP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00193DAPTransfer from AT1G49560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676782636
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2216311e-138AK221631.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-96-G04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006393245.11e-174transcription factor HHO6
SwissprotQ9FX841e-144HHO6_ARATH; Transcription factor HHO6
TrEMBLV4MGV81e-173V4MGV8_EUTSA; Uncharacterized protein
STRINGXP_006393245.11e-173(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139271824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49560.11e-115G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]