PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676782370
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 274aa    MW: 30865.3 Da    PI: 7.0463
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676782370genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-0581103123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C+ C+k Fs++  L  H++ H
  676782370  81 YTCHFCNKGFSTSQALGGHQNAH 103
                9*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.27E-778109No hitNo description
Gene3DG3DSA:3.30.160.607.7E-679108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.13381108IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MENQVMFSAS SSTSQPEKCK DIIVVAEEVR EKTTENNNLR LGSPQEVTSE RRSENSSFRS  60
GVVRTGKEIM KFYPSKSNKI YTCHFCNKGF STSQALGGHQ NAHKQEREWE KKRKEMEEDY  120
PGFAFLNPYL DKPHLLLGGY SQDALSNDNH LGITLEPFKR RANSVYSSFN SGPTRGIVDM  180
SMTVVPRMTP TRFFTGNTFT YGSRPSNGSY PQIVPRNIPP FSSPPTTNFP SDLYAQEKNF  240
ISKIGNEKIV EIDDDDDDQP GEGKSKSWGT DLSL
Cis-element ? help Back to Top
SourceLink
PlantRegMap676782370
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495535.11e-116PREDICTED: uncharacterized protein LOC104772641
TrEMBLV4KLW21e-114V4KLW2_EUTSA; Uncharacterized protein
STRINGBostr.29827s0107.1.p1e-118(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63631842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.12e-84C2H2 family protein