PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676782242
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family CO-like
Protein Properties Length: 362aa    MW: 39835.2 Da    PI: 6.177
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676782242genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box261.9e-084685439
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Htv 39
                +C++++ ++++  C+d ++ lC++C   +H+g    H+ 
  676782242 46 LICERCNAQPASVRCTDERVSLCQNCDWLGHNGdnahHKK 85
               68*****************************999997775 PP
2CCT56.51e-19305348144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                R++a+ RYkeK+k RkF+K++rY sRK++A+ R RvKGrFvk+ 
  676782242 305 RNNAVIRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSG 348
                999**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.887147IPR000315B-box-type zinc finger
CDDcd000211.78E-6447No hitNo description
SMARTSM003364.4E-7447IPR000315B-box-type zinc finger
PROSITE profilePS501199.2144388IPR000315B-box-type zinc finger
PfamPF006432.2E-54685IPR000315B-box-type zinc finger
CDDcd000214.01E-54776No hitNo description
SMARTSM003362.24888IPR000315B-box-type zinc finger
PROSITE profilePS5101714.951305347IPR010402CCT domain
PfamPF062039.9E-15305347IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVHCRSD AACLCLSCDR NVHSANALSK RHSRTLICER CNAQPASVRC  60
TDERVSLCQN CDWLGHNGDN AHHKKQTINC YSGCPSSDQL ASIWSFCLDL DFSSAGQSAC  120
EQGMGLMTID EDTSEKKSDV DQPGTSSAAQ GMDRSSVPEN ATLAKELGVS EADFCGNLIM  180
DEVDLAFEKY EELFGTAYNS SKDLFEHGGI ESLFDKHQGS IQGNAMQQPA GSNAASGDSF  240
MTCRTEPIIC FSSQPAHSNI SFSGVTGESS AADFQDCGAS SMQQLSKEPP PWCPPTSQEI  300
HATTRNNAVI RYKEKKKARK FDKRVRYVSR KERADVRRRV KGRFVKSGEA YDYDPLSPAR  360
SY
Cis-element ? help Back to Top
SourceLink
PlantRegMap676782242
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006395204.10.0zinc finger protein CONSTANS-LIKE 10
SwissprotQ9LUA90.0COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLV4MM150.0V4MM15_EUTSA; Uncharacterized protein
STRINGXP_006395204.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]