PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676782122 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | C3H | ||||||||
Protein Properties | Length: 182aa MW: 20730.5 Da PI: 9.8617 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.4 | 2.8e-09 | 92 | 115 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++lC++f + +C++Gd+C++ H+ 676782122 92 RSLCNRFITSNFCPFGDSCRYLHP 115 689********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.30.20 | 7.3E-4 | 16 | 48 | IPR020542 | Aspartate carbamoyltransferase regulatory subunit, C-terminal |
SMART | SM00451 | 0.0014 | 30 | 65 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 3.37E-11 | 31 | 69 | No hit | No description |
Pfam | PF06220 | 5.3E-8 | 32 | 64 | IPR013085 | Zinc finger, U1-C type |
PROSITE profile | PS50103 | 13.723 | 89 | 117 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-6 | 90 | 117 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.9E-4 | 90 | 116 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-6 | 92 | 115 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-6 | 93 | 114 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MGARVSHLLN LVRKSETLIK KIEREKKMPS GKYYCDYCEK EFQDTQVARK RHLQSKPHLR 60 ARSLWYSSAT SVLTSPFDPK DVNTQVSSFL PRSLCNRFIT SNFCPFGDSC RYLHPNNIPR 120 NTGLISSHTQ PLPGLPSQHI QGSSLNRDFE SGRQGTGWFD LPPSLRPPPE QGYPQLPSID 180 WG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676782122 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006394904.1 | 1e-82 | zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A1J3DEY7 | 3e-81 | A0A1J3DEY7_NOCCA; Zinc finger CCCH domain-containing protein 3 (Fragment) | ||||
STRING | XP_006394904.1 | 5e-82 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10474 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 1e-80 | C3H family protein |