PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676782024 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | MYB | ||||||||
Protein Properties | Length: 357aa MW: 40123.8 Da PI: 5.5303 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.6 | 2.2e-11 | 14 | 79 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..................TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..................kgRtlkqcksrwqkyl 48 rgrWT+eEde+l ++++ G g+W++ +++ + R++k+c++rw +yl 676782024 14 RGRWTAEEDEILTNYIQTNGEGSWRSLPKKAEkqtalylcglititkcegLLRCGKSCRLRWINYL 79 8*********************99999999999999999999999999999*************97 PP | |||||||
2 | Myb_DNA-binding | 54.9 | 2e-17 | 85 | 130 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE++ +v+++ +lG++ W++Ia +++ gRt++++k++w+++l 676782024 85 RGNITAEEEDTIVKLHSLLGNR-WSLIATHLP-GRTDNEIKNYWNSHL 130 7999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 10.069 | 9 | 79 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.2E-24 | 11 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-8 | 13 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.3E-10 | 14 | 79 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-21 | 15 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.55E-6 | 16 | 79 | No hit | No description |
PROSITE profile | PS51294 | 26.613 | 80 | 134 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-16 | 84 | 132 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 85 | 130 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-25 | 87 | 134 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.42E-10 | 89 | 130 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051555 | Biological Process | flavonol biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MGRAPCCEKV GLKRGRWTAE EDEILTNYIQ TNGEGSWRSL PKKAEKQTAL YLCGLITITK 60 CEGLLRCGKS CRLRWINYLR RDLKRGNITA EEEDTIVKLH SLLGNRWSLI ATHLPGRTDN 120 EIKNYWNSHL SRKIYAFTAV SGDEHSLNNL VLNKSSSSSS SSSGANNTNK TKKKKKGRTS 180 RSSMKKHKKM VTASQCFPQP KELESETSDA GHSGNYEVKS LGPYEWLDGE IERLMSSFMW 240 KCTSVEAVIG VNDDDPDQNK VCVSGDNSSC CMDLFEEEQR KRGNLEVDHD MNVEKEGDGS 300 VLSLNSNENG DKDWWVGLCD SSEVGFGIDD ELLGWECQGS FKYQSDDLWD LSDLGEI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-21 | 12 | 134 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis primarily in cotyledons and leaves (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00598 | PBM | Transfer from AT5G49330 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676782024 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Triggered by HY5 in response to light and UV-B. {ECO:0000269|PubMed:19895401}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF738288 | 0.0 | KF738288.1 Brassica napus MYB transcription factor 111 (MYB111.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013594136.1 | 0.0 | PREDICTED: transcription factor MYB12-like | ||||
Swissprot | Q9FJ07 | 0.0 | MY111_ARATH; Transcription factor MYB111 | ||||
TrEMBL | A0A3P6E4D8 | 0.0 | A0A3P6E4D8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A4D6Z3U3 | 0.0 | A0A4D6Z3U3_BRAOB; Transcription factor MYB12 | ||||
STRING | Bo7g092680.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 1e-165 | myb domain protein 111 |