PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676781968
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family G2-like
Protein Properties Length: 413aa    MW: 46036.9 Da    PI: 5.2987
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676781968genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.51.1e-31234288155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                k+r+rWt+eLHe+Fveav+qLGGse+AtPk++l+l++ + Lt++hvkSHLQkYR+
  676781968 234 KQRMRWTQELHEAFVEAVNQLGGSERATPKAVLKLLNNPVLTIYHVKSHLQKYRT 288
                79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.84E-16232288IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-29232290IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-22234288IPR006447Myb domain, plants
PfamPF002495.4E-9236287IPR001005SANT/Myb domain
PfamPF143795.8E-22323368IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MTLANDFGYS TAMSSSFSAL HATVEDRYRK FPNSFWGSSG QELMNNPVPC QVVSGGNSSG  60
YMFSSPSGFC NVSAVSTHGR NSQTQPPVST MPSDRLAMQD CLLEAQSSSL INHQPQEFAD  120
PLDEFFDFSD HVPVLNPQGE SGGVSSVELH EKSEWPNWAD QLIDNGLEAN WSELLGEPSP  180
HNPNSQRSHD LQQIPTPSSD VPRQEVIADQ QHQVVSLEAQ FSARNSSASA ATSKQRMRWT  240
QELHEAFVEA VNQLGGSERA TPKAVLKLLN NPVLTIYHVK SHLQKYRTAR YKPETSEATG  300
EPQEKKLTSI DDIKSLDMKT SVDITQALRL QMEVQKRLHE QLEIQRSLQL QIEKQGRYLQ  360
MMFEKQQKLQ ENKSSSSKTQ CNGTSAEVEF GLETQTGDQT ESASASRKRA RED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-26234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-26234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-26234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-26234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-26234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-26234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-26234292260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-26234292260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00532DAPTransfer from AT5G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676781968
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527940.0AK352794.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-05-N05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455200.10.0PREDICTED: protein PHR1-LIKE 1 isoform X1
RefseqXP_010455201.10.0PREDICTED: protein PHR1-LIKE 1 isoform X2
SwissprotQ8GUN50.0PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLA0A178ULC50.0A0A178ULC5_ARATH; PHL1
TrEMBLA0A3P6DLC60.0A0A3P6DLC6_BRAOL; Uncharacterized protein
STRINGXP_010455201.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.20.0G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]