PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676781912
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Trihelix
Protein Properties Length: 621aa    MW: 71279.1 Da    PI: 6.8696
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676781912genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix491.6e-1599164272
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                W+ +evlaL+++r+ +e+++ +       We+ s+k++e gf+rsp++Ckek+e+ ++ry + +++ ++++
  676781912  99 WCSDEVLALLRFRSTVENWFPEF-----TWEHTSRKLAEVGFKRSPQECKEKFEEEERRYFNGNNNTNDHH 164
                ********************998.....9*****************************9998887777763 PP
2trihelix97.71e-30459556186
   trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                rW+k+evlaLi++rr++ +   ++              ++ plWe++skkm e g++r++k+Ckekwen+nk+++k+k+ +kkr + +s+tcpyf+ql+
  676781912 459 RWPKDEVLALINIRRSISSMNDDDHhkdaialsspsstKAVPLWERISKKMLEVGYKRNAKRCKEKWENINKYFRKTKDVNKKR-PLDSRTCPYFHQLT 556
                8**************5555444432334445555555599*******************************************8.9***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-1097163No hitNo description
PROSITE profilePS500905.48298150IPR017877Myb-like domain
CDDcd122031.42E-24458536No hitNo description
PfamPF138378.0E-19458557No hitNo description
PROSITE profilePS500906.667459529IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MFDGGVPEQI HRFIPSPQPP PPLPPHQPAA ERSLPFPVSF ASFNTNHQAQ HMLSLDGRKV  60
IHHHHHHDHH DIKDSAVTSE WMGHTDHDGD NHRHHHHPWC SDEVLALLRF RSTVENWFPE  120
FTWEHTSRKL AEVGFKRSPQ ECKEKFEEEE RRYFNGNNNT NDHHMSNYNN KGTYRIFSEV  180
EEFYHHGHND DEHVVSSEVR DNQNKRNHSL EGNGNVEKTG QDLLEEDKTD HQDQGQVEES  240
SMGNKINSID NVGNVGNVED DAKSSSSSSL MMIMRDKKKR KRKRKKERFG VLKGFCEGLV  300
RNMIAQQEEM HKKLLEDMAK KEEEKMAREE AWKKQEMERL NKEVEIRAHE QAMASDRNTN  360
IIKFISKFTD HDHNHDDGNN KVQSPCPSQD SSSLVLPKPQ GSRTCQTSSS LQTLIPQDPI  420
ISLQPDDKSL EPISSKTLKT KTQIPKPPKC DEKSELGKRW PKDEVLALIN IRRSISSMND  480
DDHHKDAIAL SSPSSTKAVP LWERISKKML EVGYKRNAKR CKEKWENINK YFRKTKDVNK  540
KRPLDSRTCP YFHQLTALYS QPSSGTTTTA TDTSAGELET RPEENQVGSE DPDIPTAMHV  600
DADGAGEKSN VQFSGFDLAF Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274285RDKKKRKRKRKK
2277282KKRKRK
3277285KKRKRKRKK
4279284RKRKRK
5279285RKRKRKK
6279286RKRKRKKE
7281285RKRKK
8281286RKRKKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676781912
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0004610.0BT000461.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.
GenBankBT0083890.0BT008389.1 Arabidopsis thaliana At5g28300 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013643859.10.0trihelix transcription factor GTL2
SwissprotQ8H1810.0GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLA0A397Z1X60.0A0A397Z1X6_BRACM; Uncharacterized protein
STRINGBo7g093250.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.10.0Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]