PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676781366
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRAS
Protein Properties Length: 694aa    MW: 78228.5 Da    PI: 7.2277
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676781366genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS375.95e-1153206891374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++lL++cA+av+++d ++a +lL++++++++p gd +qRla++f+++L+arla+++s++yk + +++ s    + +l+a++lf  ++P+ k+s++++N+
  676781366 320 LRSLLIHCAQAVAADDSRCAGQLLKQIRQHSTPFGDGNQRLAHCFANGLEARLAGTGSQIYKGIVSKPRS---AAAVLKAHQLFLACCPFRKLSYFITNK 416
                689***************************************************************9999...999************************ PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                +I + v ++ rvH+iDf+i +G+QWp+L++ ++    g+p++RiTg++ p++g   ++++eetg+rLa +A+++gvpfe+++ +ak++++++le+L++++
  676781366 417 TIRDLVGNSPRVHVIDFGILYGFQWPTLIHRFSI--YGSPKVRITGIEFPQPGfrPAQRVEETGQRLAAYAKQFGVPFEYKA-IAKKWDAIQLEDLDIDR 513
                *********************************8..8***************9*****************************.7**************** PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                +E ++Vn+ ++ ++l+desv++es+rd+vL+l+ +++P+++v+   +  +n++ F++rf eal ++s++fd+le+ +pre+eer+++E e++gre+ nv+
  676781366 514 DEITVVNCLYRAENLHDESVKVESCRDTVLNLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFSSIFDMLETIVPREDEERMFLEMEVFGREALNVI 613
                **************************************************************************************************** PP

       GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                aceg er+er et+++W+ r +++G+ +vp++ +++k+    +++++ + + +++++ +l++gWk+r+++++S+W+
  676781366 614 ACEGWERVERPETYKQWHVRAMRSGLVQVPFDPSIMKTSLQKVHTFYHKDFVIDQDNRWLLQGWKGRTVMALSVWK 689
                ***********************************************888*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.753294669IPR005202Transcription factor GRAS
PfamPF035141.7E-112320689IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MINDPSLTGL MNRTRVPDQS SSLLPNHSFS PVTLFDGFNY NHINENRKTL VTSSTQQHEA  60
EEDPADDFDF SDAVLGYISE MLMEEDMEDK ACMLQESLDL EAAERSLYEA IGKKYPPSPE  120
RNNENLDHVV PGDYTTGGFN LGGRKSGFTL DFRNPQSRSS PVVSVPQSPY SYRVEESSNA  180
SGGNESVWLF RRGIEEASRF LPEKNEVVMS FREDNSRSKG RKNSNRDEVV EGEERCSKLP  240
AVFSETILRS DVVDKILVHV PGGESMKEFD ALRDVLKKGV EKKKSSAPQE GKRRARGRGR  300
GRGGGGGGGG QNGKKQVVDL RSLLIHCAQA VAADDSRCAG QLLKQIRQHS TPFGDGNQRL  360
AHCFANGLEA RLAGTGSQIY KGIVSKPRSA AAVLKAHQLF LACCPFRKLS YFITNKTIRD  420
LVGNSPRVHV IDFGILYGFQ WPTLIHRFSI YGSPKVRITG IEFPQPGFRP AQRVEETGQR  480
LAAYAKQFGV PFEYKAIAKK WDAIQLEDLD IDRDEITVVN CLYRAENLHD ESVKVESCRD  540
TVLNLIGKIN PDLFVFGIVN GAYNAPFFVT RFREALFHFS SIFDMLETIV PREDEERMFL  600
EMEVFGREAL NVIACEGWER VERPETYKQW HVRAMRSGLV QVPFDPSIMK TSLQKVHTFY  660
HKDFVIDQDN RWLLQGWKGR TVMALSVWKP ESKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4332669225382Protein SCARECROW
5b3h_A2e-4332669224381Protein SCARECROW
5b3h_D2e-4332669224381Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293302RARGRGRGRG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676781366
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0046840.0AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410955.10.0scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLV4MIK60.0V4MIK6_EUTSA; Uncharacterized protein
STRINGXP_006410955.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein