PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676781366 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | GRAS | ||||||||
Protein Properties | Length: 694aa MW: 78228.5 Da PI: 7.2277 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 375.9 | 5e-115 | 320 | 689 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++lL++cA+av+++d ++a +lL++++++++p gd +qRla++f+++L+arla+++s++yk + +++ s + +l+a++lf ++P+ k+s++++N+ 676781366 320 LRSLLIHCAQAVAADDSRCAGQLLKQIRQHSTPFGDGNQRLAHCFANGLEARLAGTGSQIYKGIVSKPRS---AAAVLKAHQLFLACCPFRKLSYFITNK 416 689***************************************************************9999...999************************ PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +I + v ++ rvH+iDf+i +G+QWp+L++ ++ g+p++RiTg++ p++g ++++eetg+rLa +A+++gvpfe+++ +ak++++++le+L++++ 676781366 417 TIRDLVGNSPRVHVIDFGILYGFQWPTLIHRFSI--YGSPKVRITGIEFPQPGfrPAQRVEETGQRLAAYAKQFGVPFEYKA-IAKKWDAIQLEDLDIDR 513 *********************************8..8***************9*****************************.7**************** PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 +E ++Vn+ ++ ++l+desv++es+rd+vL+l+ +++P+++v+ + +n++ F++rf eal ++s++fd+le+ +pre+eer+++E e++gre+ nv+ 676781366 514 DEITVVNCLYRAENLHDESVKVESCRDTVLNLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFSSIFDMLETIVPREDEERMFLEMEVFGREALNVI 613 **************************************************************************************************** PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 aceg er+er et+++W+ r +++G+ +vp++ +++k+ +++++ + + +++++ +l++gWk+r+++++S+W+ 676781366 614 ACEGWERVERPETYKQWHVRAMRSGLVQVPFDPSIMKTSLQKVHTFYHKDFVIDQDNRWLLQGWKGRTVMALSVWK 689 ***********************************************888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.753 | 294 | 669 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-112 | 320 | 689 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 694 aa Download sequence Send to blast |
MINDPSLTGL MNRTRVPDQS SSLLPNHSFS PVTLFDGFNY NHINENRKTL VTSSTQQHEA 60 EEDPADDFDF SDAVLGYISE MLMEEDMEDK ACMLQESLDL EAAERSLYEA IGKKYPPSPE 120 RNNENLDHVV PGDYTTGGFN LGGRKSGFTL DFRNPQSRSS PVVSVPQSPY SYRVEESSNA 180 SGGNESVWLF RRGIEEASRF LPEKNEVVMS FREDNSRSKG RKNSNRDEVV EGEERCSKLP 240 AVFSETILRS DVVDKILVHV PGGESMKEFD ALRDVLKKGV EKKKSSAPQE GKRRARGRGR 300 GRGGGGGGGG QNGKKQVVDL RSLLIHCAQA VAADDSRCAG QLLKQIRQHS TPFGDGNQRL 360 AHCFANGLEA RLAGTGSQIY KGIVSKPRSA AAVLKAHQLF LACCPFRKLS YFITNKTIRD 420 LVGNSPRVHV IDFGILYGFQ WPTLIHRFSI YGSPKVRITG IEFPQPGFRP AQRVEETGQR 480 LAAYAKQFGV PFEYKAIAKK WDAIQLEDLD IDRDEITVVN CLYRAENLHD ESVKVESCRD 540 TVLNLIGKIN PDLFVFGIVN GAYNAPFFVT RFREALFHFS SIFDMLETIV PREDEERMFL 600 EMEVFGREAL NVIACEGWER VERPETYKQW HVRAMRSGLV QVPFDPSIMK TSLQKVHTFY 660 HKDFVIDQDN RWLLQGWKGR TVMALSVWKP ESKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-43 | 326 | 692 | 25 | 382 | Protein SCARECROW |
5b3h_A | 2e-43 | 326 | 692 | 24 | 381 | Protein SCARECROW |
5b3h_D | 2e-43 | 326 | 692 | 24 | 381 | Protein SCARECROW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 293 | 302 | RARGRGRGRG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676781366 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC004684 | 0.0 | AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006410955.1 | 0.0 | scarecrow-like protein 9 | ||||
Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | V4MIK6 | 0.0 | V4MIK6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006410955.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |