PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676781354

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Dof

Protein Properties

Length: 325aa MW: 34950.1 Da PI: 9.1027

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676781354	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.5	6.8e-39	77	136	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+n++++ 676781354 77 EAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNRRTK 136 7789*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-38	60	134	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.9E-32	79	134	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.478	80	134	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	82	118	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MVFSSIQAYL DSSNWQQAPP SNYNQGSAGA SGTGGHGLRP QLQAQSQPQS NGSGGSGSIR 60 PGSMVDRARQ ANVSMPEAAL KCPRCESTNT KFCYFNNYSL TQPRHFCKTC RRYWTRGGAL 120 RNVPVGGGCR RNRRTKSSNN NSSTATSNNT SFSSAASGNA STISAILSSN YGGNHENILS 180 QILSPGRLMN PNYNHHLGDQ TDNTKTDNSM SLLNYAGLSQ DLRSIHMGTS GGSLMSCVDE 240 WRTTSHHHQQ PQSLGGGNLE DSCNPNQSSN GFYPFESPRI TSASISSALA SQFSSVKVED 300 NPYKWVNVNG NCSSWTDLST FGSSR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	133	RNVPVGGGCRRNRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements. Triggers the transcription of HD-ZIP III genes, especially in the central domain of vascular tissue (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:17583520, ECO:0000269\|PubMed:30626969}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00295	DAP	Transfer from AT2G37590	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676781354

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium. Antagonized by the HD-ZIP III proteins and by mobile miR165 and miR166 microRNAs. {ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009143473.1	0.0	PREDICTED: dof zinc finger protein DOF2.4
Swissprot	O80928	1e-167	DOF24_ARATH; Dof zinc finger protein DOF2.4
TrEMBL	M4CLU4	1e-180	M4CLU4_BRARP; Uncharacterized protein
STRING	Bra005181.1-P	1e-180	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11354	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	1e-152	DNA binding with one finger 2.4

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]