PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676781130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 259aa MW: 29759.3 Da PI: 9.5834 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51.1 | 2.3e-16 | 116 | 161 | 11 | 56 |
HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 q+ +Le+ Fe+++++ e++ LAkklgL++rqV vWFqNr+a+ k 676781130 116 QVSQLETSFEEENKLEPERKIVLAKKLGLPQRQVAVWFQNRKARCK 161 899*****************************************98 PP | |||||||
2 | HD-ZIP_I/II | 105.2 | 5.2e-34 | 116 | 197 | 10 | 91 |
HD-ZIP_I/II 10 qvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 qv++LE+sFeee+kLeperK la++Lgl +rqvavWFqnr+AR k k++E+dy+ Lk++yd+l +++e++ +e+e+L++++ 676781130 116 QVSQLETSFEEENKLEPERKIVLAKKLGLPQRQVAVWFQNRKARCKIKKIERDYDILKACYDSLLAKHESVISENEKLKSKV 197 99*****************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 3.1E-12 | 107 | 167 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-16 | 116 | 170 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.67E-12 | 116 | 164 | No hit | No description |
SuperFamily | SSF46689 | 1.37E-14 | 116 | 172 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.3E-13 | 116 | 161 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 14.22 | 116 | 163 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 7.5E-5 | 134 | 143 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 138 | 161 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.5E-5 | 143 | 159 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.4E-15 | 163 | 204 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MADIPPLDLV DIRIEPSLIQ KSNNPAQFNP SPTSVFYFLS PYANQPPITI KKASHKKTTS 60 PFEVLVLSFQ GAKLAMEMKE TSTGEIDNQP PEKKRRLTIE QVKYIYKEIQ RSLLLQVSQL 120 ETSFEEENKL EPERKIVLAK KLGLPQRQVA VWFQNRKARC KIKKIERDYD ILKACYDSLL 180 AKHESVISEN EKLKSKVLTL TEKLLPATNQ THRIFQDKLN SKGDETMSSS TALVPLANDD 240 YLTNIDQSFG WWVWPPNLK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676781130 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232548 | 1e-91 | AC232548.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010J09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590148.1 | 3e-91 | PREDICTED: homeobox-leucine zipper protein HAT5-like | ||||
Refseq | XP_013700742.1 | 3e-91 | homeobox-leucine zipper protein HAT5-like | ||||
Refseq | XP_013700743.1 | 3e-91 | homeobox-leucine zipper protein HAT5-like | ||||
TrEMBL | A0A1J3EYU0 | 1e-100 | A0A1J3EYU0_NOCCA; Homeobox-leucine zipper protein HAT5 | ||||
STRING | A0A087GTD2 | 7e-92 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16382 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 4e-40 | homeobox 1 |