PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676780880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | MYB | ||||||||
Protein Properties | Length: 974aa MW: 108092 Da PI: 5.443 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.9 | 4.7e-18 | 35 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l 676780880 35 KGQWTPEEDEVLCKAVERFQGKNWKKIAECFK-DRTDVQCLHRWQKVL 81 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 60.3 | 4.2e-19 | 87 | 133 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd ++ +v+++G++ W+tI+++++ gR +kqc++rw+++l 676780880 87 KGPWSKEEDNTIIALVEKYGPKKWSTISQHLP-GRIGKQCRERWHNHL 133 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 52.9 | 8.4e-17 | 139 | 181 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE++ l++a++ +G++ W+ ++ ++ gR+++++k++w+ 676780880 139 KNAWTQEEELTLIRAHQIYGNK-WAELMKFLP-GRSDNSIKNHWN 181 689*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.523 | 30 | 81 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 34 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-15 | 35 | 81 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 36 | 93 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.44E-15 | 36 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.78E-13 | 38 | 81 | No hit | No description |
PROSITE profile | PS51294 | 32.596 | 82 | 137 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-31 | 84 | 180 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-18 | 86 | 135 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.2E-18 | 87 | 133 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.14E-16 | 89 | 133 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.9E-27 | 94 | 140 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.2E-15 | 138 | 186 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.286 | 138 | 188 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.3E-14 | 139 | 182 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.60E-11 | 141 | 181 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-21 | 141 | 188 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 974 aa Download sequence Send to blast |
MKREMKAPNV AEEDFQGNLQ GKHGRTCGPA RRSTKGQWTP EEDEVLCKAV ERFQGKNWKK 60 IAECFKDRTD VQCLHRWQKV LNPELVKGPW SKEEDNTIIA LVEKYGPKKW STISQHLPGR 120 IGKQCRERWH NHLNPGINKN AWTQEEELTL IRAHQIYGNK WAELMKFLPG RSDNSIKNHW 180 NSSVKKKLDS YYASGLLDQC QNSPLIALQN RSIASSSSWM NSSGDEGNYR PGTDAEESEC 240 SQASTVFSCS QSTNDLLDEV KPANEEFYIP ELPSGSELQI SNSPSHAKSY YPSFEDVKIV 300 VPEISCEAES SKKDQNHNCS TEVRTNTATE DHLQGVSNNA KQDLDLECPQ LLTDNMDGDG 360 RNEACQTFQN SVRLSDQPSL PNSDPDTHQQ PQTLITDEEC CRVLFPSTMK DSGTSSGEQV 420 QNMVDPQKDK GYLCSRSAET NAHEAGNIPA LSWHPSNSKE LVGHNSVPLL YSAAKDSLSL 480 SNDSIQGCHL LGATALERKT DKNDGFIDSD GHVTSHGNDD NDGIPEQQEL AYIPRDSLKL 540 VPLNNFSSPS RVNKIYFPID DKPAEKDKGS LCYEPPRFPS ADIPFFSCDL VPSNSDLRQE 600 YSPFGIRQLM ISSMNCTTPL RLWDSPCHDK SPDVMLKDAA KSFSGAPSIL KKRHRDLLSP 660 VLDRRKEKML KSAEASSLAK DFSRLDVMLD DGDYCNSSRL PECADNKNIC ASSSKAKEDS 720 KETLESGGVT PAKLDQETRR SLVYYNDVEM QLSSPDKTGS IPDNKVNTIG KDPSNQHEKS 780 LGTLPTGEIS SEPPFAAESI PLSTIAGSKT NTAESSVNIE NFSIFDGTPF KKLLDTPSPW 840 KSPLLFGSFL QSPKLPPEIT FEDIGCFMSP GERSYDAIGL MKHLSEHTAT AYADALEVLG 900 NDTPETILKK RQLNKSIQGK ENQHWPHDQL ENRSQVERRA LDFSDCGTPG KAKVSSASPG 960 GYSSPSSYLL KSCR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-66 | 35 | 188 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-66 | 35 | 188 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00466 | DAP | Transfer from AT4G32730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676780880 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF151646 | 0.0 | AF151646.1 Arabidopsis thaliana PC-MYB1 (PC-MYB1) mRNA, complete cds. | |||
GenBank | AF176005 | 0.0 | AF176005.2 Arabidopsis thaliana putative c-myb-like transcription factor (AtMYB3R-1) mRNA, complete cds. | |||
GenBank | AF189784 | 0.0 | AF189784.1 Arabidopsis thaliana putative c-myb-like transcription factor (MYB3R-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006412436.2 | 0.0 | transcription factor MYB3R-1 | ||||
Swissprot | Q9S7G7 | 0.0 | MB3R1_ARATH; Transcription factor MYB3R-1 | ||||
TrEMBL | V4MBV4 | 0.0 | V4MBV4_EUTSA; Uncharacterized protein | ||||
STRING | XP_006412436.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4674 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.2 | 0.0 | Homeodomain-like protein |
Publications ? help Back to Top | |||
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