PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676780740

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Protein Properties

Length: 395aa MW: 44662.8 Da PI: 6.4353

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676780740	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45	1.9e-14	34	114	13	98
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++rl +p kf + +++k sk +tl+++sg +++v l + + + + GW +Fv ++ L+e D +vFk++g sef v +f+ 676780740 34 HNRLAIPQKFSTYCKSK--LSKIVTLKSPSGARYNVGL--EEDDAKtLAFCCGWDKFVIDHSLQESDLLVFKFHGASEF--EVLIFD 114 789*****9777766..899************..55555548889*******************9998999..888876 PP
2	B3	48.5	1.6e-15	287	385	1	98
EEEE-..-HHHHTT-E..E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEE CS B3 1 ffkvltpsdvlksgrl..vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkv 96 f+ ++++s+ l ++ l ++p + +++++ +++ +++ ++ + +W +k+++ +++ r +++GWk+Fvk+n+L++gD++vF+ ++ + +l v + 676780740 287 FLVIMKRSHLLPKCFLeqTIPIQWSAKNMSLEPQ--EVV-MQMDQTKWHLKYSFFGTRFRGGISTGWKKFVKDNNLCQGDVCVFEPAkSEtKPLHLDVYI 383 5667777888888877779999999999666444..566.455889******7777777799*******************662444555566666 PP E- CS B3 97 fr 98 fr 676780740 384 FR 385 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.05E-19	21	115	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.915	22	116	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	7.8E-19	23	114	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.11E-15	24	114	No hit	No description
SMART	SM01019	2.0E-15	25	116	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.8E-12	34	114	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	7.9E-17	286	386	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	1.0E-12	287	387	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.4E-13	287	385	IPR003340	B3 DNA binding domain
CDD	cd10017	1.13E-16	287	385	No hit	No description
SuperFamily	SSF101936	2.75E-15	287	385	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.856	306	387	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005773	Cellular Component	vacuole
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MEENCKDCMR WEEELYWTHF QTLHFSQLLL PGFHNRLAIP QKFSTYCKSK LSKIVTLKSP 60 SGARYNVGLE EDDAKTLAFC CGWDKFVIDH SLQESDLLVF KFHGASEFEV LIFDGDTLCE 120 KPTSYFVRKC GHAEKTRATY FTATSSRSPQ RHINCDDNET KVNQLQPVLS PVGNELDDLI 180 DIDIDSMLNQ ELVVSQTGFE QEEHINSDID TESGLLPVLS PTSTGPISEG KYPLGVFKKM 240 RGEISNNNLD CKAGVEMISV GSRKSVGETN KRKALSLAKR AISPNGFLVI MKRSHLLPKC 300 FLEQTIPIQW SAKNMSLEPQ EVVMQMDQTK WHLKYSFFGT RFRGGISTGW KKFVKDNNLC 360 QGDVCVFEPA KSETKPLHLD VYIFRAAEAE SSNNG

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MEENCKDCMR WEEELYWTHF QTLHFSQLLL PGFHNRLAIP QKFSTYCKSK LSKIVTLKSP  60
SGARYNVGLE EDDAKTLAFC CGWDKFVIDH SLQESDLLVF KFHGASEFEV LIFDGDTLCE  120
KPTSYFVRKC GHAEKTRATY FTATSSRSPQ RHINCDDNET KVNQLQPVLS PVGNELDDLI  180
DIDIDSMLNQ ELVVSQTGFE QEEHINSDID TESGLLPVLS PTSTGPISEG KYPLGVFKKM  240
RGEISNNNLD CKAGVEMISV GSRKSVGETN KRKALSLAKR AISPNGFLVI MKRSHLLPKC  300
FLEQTIPIQW SAKNMSLEPQ EVVMQMDQTK WHLKYSFFGT RFRGGISTGW KKFVKDNNLC  360
QGDVCVFEPA KSETKPLHLD VYIFRAAEAE SSNNG

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00468	DAP	Transfer from AT4G33280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676780740

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ441117	1e-128	AJ441117.1 Arabidopsis thaliana mRNA for auxin response factor 36 (arf36 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013705531.1	0.0	B3 domain-containing protein REM16 isoform X1
Swissprot	Q8RYD1	1e-167	REM16_ARATH; B3 domain-containing protein REM16
TrEMBL	A0A3N6R864	0.0	A0A3N6R864_BRACR; Uncharacterized protein
STRING	Bra037010.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10428	23	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	1e-169	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]