PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676780500
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 657aa    MW: 76391.1 Da    PI: 10.1501
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676780500genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.5e-09421466248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g W   Ede+l+ a  ++G+++W ++++     +++kqck+rw+ +l
        676780500 421 GVWKNTEDEILKAAMMKYGKNQWGRVSSLGF-QKSAKQCKDRWNEWL 466
                      78*************************9988.8***********986 PP
2Myb_DNA-binding36.41.2e-11473516248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT eEde+l+++ k l++  W+tIa ++g  Rt+ qc +r+ k+l
        676780500 473 TEWTREEDEKLLHLAKILPSQ-WRTIAPMVG--RTASQCLERYEKLL 516
                      68*******************.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037547.1E-43190306IPR005508B3 domain-containing protein
Gene3DG3DSA:2.40.330.101.6E-15204325IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-14207323IPR015300DNA-binding pseudobarrel domain
CDDcd100174.10E-7211323No hitNo description
PROSITE profilePS5086311.039232337IPR003340B3 DNA binding domain
PROSITE profilePS512949.292415466IPR017930Myb domain
SuperFamilySSF466895.38E-7418463IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-17419470IPR009057Homeodomain-like
SMARTSM007179.4E-10419468IPR001005SANT/Myb domain
CDDcd001676.80E-7423466No hitNo description
PfamPF139211.3E-12423483No hitNo description
SuperFamilySSF466893.04E-20450521IPR009057Homeodomain-like
PROSITE profilePS5129420.155467520IPR017930Myb domain
CDDcd116591.71E-30468519No hitNo description
SMARTSM007171.3E-12471518IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-13471517IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MNMYYGELTE MWSNFSLLVD NAVLLYDQEH KRTSESCHTK KKTESPKEDD DEQRMKRIFH  60
HFPRKPRSSL KKTPNRRNAL QNPNGASTSS SRLFDLNMIP EDTETEEDQQ NLLQLEISTS  120
SLSPLLVNCN MVESEKTEAK NLTKPSSPSS SSSCLTENTS RKRRAVQERK GNNIKKAKVS  180
LLCSSWKGKD TPDWVVQLMK SMKGAQDPML IFEKALFETD VDPRQSRLSM PFNKLIRHDF  240
LTPVESRIIE EDINNNNNEK MGVGAVLVDQ RIRKWGVILK RWEGKRDVGH ESWKYALICG  300
WNDVVKANGL KDGDNISLWS FRKLKKGKHK TTKMRELVQK LEQCFHQEHP SSFSFHRVKI  360
KPKDLAKDSK KLYHARRLVE HENAQGCKRT GQKNRFPNLR KHYSFTYFEF RAKMRRVMNG  420
GVWKNTEDEI LKAAMMKYGK NQWGRVSSLG FQKSAKQCKD RWNEWLDPSI KKTEWTREED  480
EKLLHLAKIL PSQWRTIAPM VGRTASQCLE RYEKLLDAAC TNKDESYEAA DDPRRLRLGE  540
IDPNAESKPA RPDPVDMDEY EKEMLSEARA RLANTKGKKA KRKARERQIE EAKVLASLQK  600
RRELKAAGID DGKHRKSKLK GIDYNAEIPF EKRAPAGFYD TVYEDRPAEQ VKFSKYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L1e-1024146551241Cell division cycle 5-like protein
5xjc_L1e-1024146551241Cell division cycle 5-like protein
5yzg_L1e-1024146551241Cell division cycle 5-like protein
5z56_L1e-1024146551241Cell division cycle 5-like protein
5z57_L1e-1024146551241Cell division cycle 5-like protein
5z58_L1e-1024146551241Cell division cycle 5-like protein
6ff4_L1e-1024146551241Cell division cycle 5-like protein
6ff7_L1e-1024146551241Cell division cycle 5-like protein
6icz_L1e-1024146551241Cell division cycle 5-like protein
6id0_L1e-1024146551241Cell division cycle 5-like protein
6id1_L1e-1024146551241Cell division cycle 5-like protein
6qdv_O1e-1024146551241Cell division cycle 5-like protein
Cis-element ? help Back to Top
SourceLink
PlantRegMap676780500
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16532913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.11e-125cell division cycle 5