PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676780422

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

NAC

Protein Properties

Length: 97aa MW: 12056.9 Da PI: 10.0571

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676780422	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	84.9	1.6e-26	4	77	1	73
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkr 73 lp GfrF+Ptdeelv++yL+ k++g++ e+ +vi+evd++k+ePwdLp + +k+e+ ew+fF++rd+ky++g+ 676780422 4 LPLGFRFRPTDEELVNHYLRLKINGRHSEV-RVIPEVDVCKWEPWDLPglSVIKTEDPEWFFFCPRDQKYPNGRT 77 699**********************999.99***********6447888999***********9873 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.5E-29	3	77	IPR003441	NAC domain
PROSITE profile	PS51005	27.122	4	97	IPR003441	NAC domain
Pfam	PF02365	8.7E-13	5	74	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
MESLPLGFRF RPTDEELVNH YLRLKINGRH SEVRVIPEVD VCKWEPWDLP GLSVIKTEDP 60 EWFFFCPRDQ KYPNGRTHPY LQRRIRRILR PWRWFHR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-19	3	75	14	84	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269\|PubMed:17947243, ECO:0000269\|PubMed:18443413, ECO:0000269\|PubMed:22826500, ECO:0000269\|PubMed:24329768}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676780422

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016716496.1	1e-48	PREDICTED: NAC domain-containing protein 14-like isoform X1
Refseq	XP_016716497.1	1e-48	PREDICTED: NAC domain-containing protein 14-like isoform X2
Refseq	XP_017649420.1	1e-48	PREDICTED: NAC domain-containing protein 14 isoform X1
Refseq	XP_017649421.1	1e-48	PREDICTED: NAC domain-containing protein 14 isoform X2
Swissprot	F4JN35	2e-47	NTL9_ARATH; Protein NTM1-like 9
TrEMBL	A0A2P5VWD8	2e-47	A0A2P5VWD8_GOSBA; Uncharacterized protein
STRING	XP_006439176.1	2e-46	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM37950	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.3	4e-50	NAC transcription factor-like 9

Publications ? help Back to Top
Zheng XY, et al. Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73 [PMID:26139525] Guo T, et al. Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana. Mol Plant, 2017. 10(10): p. 1334-1348 [PMID:28943325]