PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676780246
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 304aa    MW: 32804.5 Da    PI: 6.9998
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676780246genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.71.5e-191358147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd+ll  +v+++G+++W++I++ ++ gR++k+c++rw + 
        676780246 13 KGPWSPEEDDLLQSLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 58
                     79******************************.***********985 PP
2Myb_DNA-binding52.61e-1667109347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +++ eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ 
        676780246  67 SFSLEEDETILRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 109
                      6999****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.612863IPR017930Myb domain
SuperFamilySSF466892.88E-3110106IPR009057Homeodomain-like
SMARTSM007173.4E-171261IPR001005SANT/Myb domain
PfamPF002491.5E-191358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-261466IPR009057Homeodomain-like
CDDcd001671.77E-161557No hitNo description
SMARTSM007176.1E-1464112IPR001005SANT/Myb domain
PROSITE profilePS5129419.7165114IPR017930Myb domain
PfamPF002493.3E-1467109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-2267113IPR009057Homeodomain-like
CDDcd001672.48E-1167110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MSGSTRKETD RIKGPWSPEE DDLLQSLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS  60
PEVEHRSFSL EEDETILRAH ARFGNKWATI ARLLNGRTDN AIKNHWNSTL KRKCSGGGGG  120
GGGGGGGWTS DEGQSCDFGG NGGYDGNLTD EQPLKRTATG LFMSPGSPSG SDVSEQSCGP  180
VMQCSLAHVF KPKARAGGVV MESSTVKDPV TTSLSLSLPW SNEASRDTAE LFTVRKEEEE  240
EREKGISGFS GDFMTVVQEM IKTEVRSYMT DLQLGNGGGS SCMVQGTNGR SVGFREFIGI  300
GKIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-40121143105MYB PROTO-ONCOGENE PROTEIN
1h88_C6e-401211457159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-401211457159MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-40121143105C-Myb DNA-Binding Domain
1msf_C1e-40121143105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00274DAPTransfer from AT2G23290Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676780246
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404809.11e-174transcription factor MYB73
SwissprotO231601e-137MYB73_ARATH; Transcription factor MYB73
TrEMBLV4LUU21e-173V4LUU2_EUTSA; Uncharacterized protein
STRINGXP_006404809.11e-174(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.11e-143myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]