PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676780088

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

M-type_MADS

Protein Properties

Length: 1215aa MW: 129266 Da PI: 4.653

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676780088	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.3	3.1e-16	3	44	2	43
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 ri n+ r +t+ kR++ +lKKA+E S+LC+++ ++ii++++ 676780088 3 RITNEKTRITTYKKRKACLLKKASEFSTLCGVNTCLIIYGPS 44 89**************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00266	1.18E-19	1	71	No hit	No description
SMART	SM00432	1.9E-7	1	53	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.554	1	44	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.19E-16	2	86	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.4E-15	3	44	IPR002100	Transcription factor, MADS-box
Gene3D	G3DSA:3.30.70.330	1.0E-22	737	838	IPR012677	Nucleotide-binding alpha-beta plait domain
SuperFamily	SSF54928	1.33E-23	740	825	IPR012677	Nucleotide-binding alpha-beta plait domain
PROSITE profile	PS50102	13.771	741	819	IPR000504	RNA recognition motif domain
SMART	SM00360	2.4E-18	742	815	IPR000504	RNA recognition motif domain
CDD	cd12372	3.90E-32	743	816	No hit	No description
Pfam	PF00076	2.8E-13	743	812	IPR000504	RNA recognition motif domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000166	Molecular Function	nucleotide binding
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1215 aa Download sequence Send to blast
MARITNEKTR ITTYKKRKAC LLKKASEFST LCGVNTCLII YGPSRAGEER INGPELWPNE 60 SKVREIISKY RDTASSSCTK TYSVQECLER SKAKVEKVKY CPWDEKLDKC SLNELYAAFV 120 AVGNKIQEAA NRNQTFPDGS WSTDQLDLFG YNQQQCLEQH QLFPLSTMEH NGFAFLPFLN 180 QISSNPAESS SFANETKPEM TQAMFYGSCS NGQYAPMVHG TAYMEPMQWG LGNSMFNNMQ 240 PFADYPLRFG QVNELENSGN ISGALAGVDG VDGIPGVVTG AAIVGAAAVT GGWLAGAVVG 300 DSIEAVGLVV GAEKGDFTGM VVGGETGAFA GVKTGVAAVV GEEKGEVAGA KTGDFIGDAL 360 VLDNTGELAG DKSGDFEGVA MDREETGGFG GAAMVREDPG ELAGEKTGDF KGGVIVRGGA 420 AGETTGAFSG DAVVGEKTGE IAGAETGDFS EVAMVGEITG AKTEDFVGVA VVGEETGEFV 480 GVNITDFTGV AIDGEETETF PGDVAGEEFK MDEGDGRDQV DQFHRNEAIS AVADEGFMAE 540 EEDDDYDDLY NDVNVGEGFL QSMKKNDEAG SRNEDKDKVK TEVEDRVEPV LGTSEAEVSI 600 PGLVEESVGV KEEAESEAGG GGGESGTDVV VASSGYGAQQ LKVSDVSQQV PGGAGGGLRV 660 ELGQAPQVEA PRGNNIAQGL LPPPPSLGNN ENLIRPIMGN VNGVAPPGPG SNMVGNGATI 720 HMPGVPTGGG TGGGAGGGGG TFLFVGDLHW WTTDAELEAE LCKYGAVKEV KFFDEKASGK 780 SKGYCQVEFY DPMAATACKE GMNGYAFNGR PCVVEFASPY TVKRMGEAQV NRNQQAQSVL 840 AQAKRGGPAD PPIKPVVATT NNNSNNNAIG GNFQGGENRG FGRGWGRSNA QGMGGRGPGG 900 QMRNRPGMGG RGLMGNGGGG FGQGMGTGPP MNMMHPQSMM GQGFEQAFGG PMARMGTYGG 960 FPGAPGPPFA GLLPSYPPVG VGGLPGVAPH VNPAFFGRGM PMNGMGMMPN AGVDGGHNMG 1020 MWDPNSGGWG GGEDLGGGRA AESSYGEEAA SDHQYGEVNH DRARPNTAKD KERTSEREWS 1080 GSSDRRNRED KDAGYERDMP REKDVGHGYD FPERRHRDDR DTGREREREH HHKERERSRD 1140 RDRERDRERD RHREERERYG GDHRNRHRDE PEHDDEWNRG RSSRGHSKSR LSREDNHRSR 1200 SRDADYGKRR RLAIE

Sequence ? help Back to Top

Protein Sequence Length: 1215 aa Download sequence Send to blast

MARITNEKTR ITTYKKRKAC LLKKASEFST LCGVNTCLII YGPSRAGEER INGPELWPNE  60
SKVREIISKY RDTASSSCTK TYSVQECLER SKAKVEKVKY CPWDEKLDKC SLNELYAAFV  120
AVGNKIQEAA NRNQTFPDGS WSTDQLDLFG YNQQQCLEQH QLFPLSTMEH NGFAFLPFLN  180
QISSNPAESS SFANETKPEM TQAMFYGSCS NGQYAPMVHG TAYMEPMQWG LGNSMFNNMQ  240
PFADYPLRFG QVNELENSGN ISGALAGVDG VDGIPGVVTG AAIVGAAAVT GGWLAGAVVG  300
DSIEAVGLVV GAEKGDFTGM VVGGETGAFA GVKTGVAAVV GEEKGEVAGA KTGDFIGDAL  360
VLDNTGELAG DKSGDFEGVA MDREETGGFG GAAMVREDPG ELAGEKTGDF KGGVIVRGGA  420
AGETTGAFSG DAVVGEKTGE IAGAETGDFS EVAMVGEITG AKTEDFVGVA VVGEETGEFV  480
GVNITDFTGV AIDGEETETF PGDVAGEEFK MDEGDGRDQV DQFHRNEAIS AVADEGFMAE  540
EEDDDYDDLY NDVNVGEGFL QSMKKNDEAG SRNEDKDKVK TEVEDRVEPV LGTSEAEVSI  600
PGLVEESVGV KEEAESEAGG GGGESGTDVV VASSGYGAQQ LKVSDVSQQV PGGAGGGLRV  660
ELGQAPQVEA PRGNNIAQGL LPPPPSLGNN ENLIRPIMGN VNGVAPPGPG SNMVGNGATI  720
HMPGVPTGGG TGGGAGGGGG TFLFVGDLHW WTTDAELEAE LCKYGAVKEV KFFDEKASGK  780
SKGYCQVEFY DPMAATACKE GMNGYAFNGR PCVVEFASPY TVKRMGEAQV NRNQQAQSVL  840
AQAKRGGPAD PPIKPVVATT NNNSNNNAIG GNFQGGENRG FGRGWGRSNA QGMGGRGPGG  900
QMRNRPGMGG RGLMGNGGGG FGQGMGTGPP MNMMHPQSMM GQGFEQAFGG PMARMGTYGG  960
FPGAPGPPFA GLLPSYPPVG VGGLPGVAPH VNPAFFGRGM PMNGMGMMPN AGVDGGHNMG  1020
MWDPNSGGWG GGEDLGGGRA AESSYGEEAA SDHQYGEVNH DRARPNTAKD KERTSEREWS  1080
GSSDRRNRED KDAGYERDMP REKDVGHGYD FPERRHRDDR DTGREREREH HHKERERSRD  1140
RDRERDRERD RHREERERYG GDHRNRHRDE PEHDDEWNRG RSSRGHSKSR LSREDNHRSR  1200
SRDADYGKRR RLAIE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	726	740	TGGGTGGGAGGGGGT
2	1142	1152	RERDRERDRHR
3	1207	1211	KRRRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676780088

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006401427.1	0.0	cleavage and polyadenylation specificity factor subunit 6
TrEMBL	V4KXZ3	0.0	V4KXZ3_EUTSA; Uncharacterized protein
STRING	XP_006401427.1	0.0	(Eutrema salsugineum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	1e-128	M-type_MADS family protein