PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676779766

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 298aa MW: 34192.7 Da PI: 4.672

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676779766	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.1	6.4e-08	175	219	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ +eL +l+P +Kl+ ae+ + A +Y+k Lq 676779766 175 SIAARERRRRIADKTHELSKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 219 677899***************86.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.46E-11	162	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.62	169	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-10	173	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-5	175	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.8E-9	175	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.47E-4	191	222	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MSSMDCLSHF FDWDPPSQLQ DCFIPDMDTI IPETDSFFFQ SQPPLQFHQP LFEEEAPSQS 60 LLELTHLDSF CDQFLPPQEM CLPYPKTELF DETDNLDSFL AASKRQKLVN SSYHCNTHNH 120 FSSTNPNFFN YYDELDFVPK ASMFPEFRVP DFPLAFKAGR GDEDGTKKPT LSTQSIAARE 180 RRRRIADKTH ELSKLIPGGQ KLNTAEMFQA AAKYVKFLQS QVGILQMMQT TKKMHIADVE 240 IETRVLLESQ AIQEKLSTDE VCLVPCEMVR DLASEESIRR NPMISREINK LLSADLAN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676779766

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006410635.2	1e-168	transcription factor bHLH53
Swissprot	Q84RD0	1e-149	BH053_ARATH; Transcription factor bHLH53
TrEMBL	V4MHR8	1e-169	V4MHR8_EUTSA; Uncharacterized protein
STRING	XP_006410635.1	1e-170	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4547	25	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	1e-136	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]