PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676778894 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 29233.7 Da PI: 6.1782 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.8 | 6.3e-16 | 85 | 136 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++K + a+i+ A+++Ik+L+ 676778894 85 QRMTHIAVERNRRRQMNQHLSVLRSLMPQP---FAQKGDQASIVGGAIDFIKELE 136 79****************************...9******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 9.2E-14 | 83 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.26E-14 | 83 | 139 | No hit | No description |
SuperFamily | SSF47459 | 2.49E-16 | 83 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.031 | 84 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-13 | 85 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.3E-11 | 90 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MTLEALSSNG LLNFLLSETL SPTPFKSLVD LEPSPDNDII ISKNTIPAIS PQEQSSRQPP 60 PASRGKKRRR RKPRVCKNEE EAENQRMTHI AVERNRRRQM NQHLSVLRSL MPQPFAQKGD 120 QASIVGGAID FIKELEHQLL SLEAHKLQKA KLNQTVTSST SQDSNREREN PHQPCSPSLS 180 QFFLHSYDPS QENRNGSTSS VKTDMEDIEV EESCQLSSVD DIAGAVHHML SIIEEEPFCC 240 SSLPELPFDF SVNHTNGAHS L |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 65 | 71 | KKRRRRK |
2 | 65 | 72 | KKRRRRKP |
3 | 66 | 71 | KRRRRK |
4 | 67 | 73 | RRRRKPR |
5 | 85 | 96 | RMTHIAVERNRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676778894 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353555 | 0.0 | AK353555.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-J01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006398364.1 | 1e-122 | transcription factor bHLH71 | ||||
Swissprot | Q56XR0 | 1e-111 | BH071_ARATH; Transcription factor bHLH71 | ||||
TrEMBL | E4MYF8 | 1e-120 | E4MYF8_EUTHA; mRNA, clone: RTFL01-52-J01 | ||||
TrEMBL | V4LBP7 | 1e-120 | V4LBP7_EUTSA; Uncharacterized protein | ||||
STRING | XP_006398364.1 | 1e-121 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10389 | 25 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46690.1 | 2e-97 | beta HLH protein 71 |
Publications ? help Back to Top | |||
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