PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676777966

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Nin-like

Protein Properties

Length: 945aa MW: 104886 Da PI: 4.8115

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676777966	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.5	2.3e-27	644	694	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek i l++l++yF++++kdAAk++gvc+T+LKriCR++GI RWP+Rkik++ 676777966 644 EKIIGLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRHHGITRWPSRKIKKV 694 68899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.665	633	714	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-23	648	694	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.91E-23	839	932	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.2E-23	845	929	No hit	No description
PROSITE profile	PS51745	27.248	847	930	IPR000270	PB1 domain
SMART	SM00666	1.0E-27	847	930	IPR000270	PB1 domain
Pfam	PF00564	4.2E-17	848	929	IPR000270	PB1 domain
CDD	cd06407	7.81E-43	849	929	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 945 aa Download sequence Send to blast
MEDDGGSDGG EGNGGFSPNS SFGAFPETAM DLDFMDELLF DGCWLETTDS KRLKQTEETG 60 SASTAMNDNT PFLCFGENPS QDNFSNEETE RMFLHSPNYL KNDKSMNQEP FNQVATSSEQ 120 AEKFLLEDAE VGRSWWIAPR GSEEDPSSSV KERLLRAISG LDEAVPDKDF LVQIWVPFQQ 180 EGKNFLTTLE QPHLFNQEYS SLAKYRHVSE TYNFPADEGS TEVGLPGRVF LQKFPEWTPD 240 VRFFRSEEYP RIKEAQKCDV RGSLALPVFE RCSGICLGVV EIVTTTQKMN YRPELENICK 300 ALEAVDLRSS SNLSPPRVEV HSLDSYFIQV YNDFYHAALP EISDFLASVC RSYDLPLALS 360 WAPCARQGKG GSRHSDENFS QCVSTVDSAC FVLDEQSKYF LEACSEHHLL QGEGIVGKAF 420 KATKLFFVPE VATFSKTNYP LAHHAKISGL HAALAVPLKS KCNGSVEFVL EFFFPKACLD 480 TEAKQEMLKS LSVTLQQDFR SSNLVIDKDL ELEVVLLVRE DMVLSENPPT GAETAESLRE 540 IHLLQESSWI SHMIKANEKG KDVSLSWEYQ NEDPKDEFKL SSDRDNSKLD PAPNNFPSEA 600 EQFQQASTSG VKVDAGPGTE SASTGGGNML GSRRPGEKRR TKTEKIIGLD VLRQYFAGSL 660 KDAAKSIGVC PTTLKRICRH HGITRWPSRK IKKVGHSLKK LQLVMDSVQG AQGSIPLDSF 720 YTSFPELSSP NMSSNGTSLK SNDQLQHLNV PTENGGLAED KAAPRSPTSS GSGSSSNTVN 780 AANTLQVAED ADAVLKKAHS EAELQNGNQE ETKCLARTQS QFKEPPVPEN LHSLPGSGNM 840 SLRAGAAYKV KATFGEARIR FTLLPNWGYR ELQQEIARRF NIDDVSWFDL KYLDDDKEWV 900 LLTCEADLEE CIDIYRSSQS QTIKISLHEA FQIKLGGSFG STGQS

Sequence ? help Back to Top

Protein Sequence Length: 945 aa Download sequence Send to blast

MEDDGGSDGG EGNGGFSPNS SFGAFPETAM DLDFMDELLF DGCWLETTDS KRLKQTEETG  60
SASTAMNDNT PFLCFGENPS QDNFSNEETE RMFLHSPNYL KNDKSMNQEP FNQVATSSEQ  120
AEKFLLEDAE VGRSWWIAPR GSEEDPSSSV KERLLRAISG LDEAVPDKDF LVQIWVPFQQ  180
EGKNFLTTLE QPHLFNQEYS SLAKYRHVSE TYNFPADEGS TEVGLPGRVF LQKFPEWTPD  240
VRFFRSEEYP RIKEAQKCDV RGSLALPVFE RCSGICLGVV EIVTTTQKMN YRPELENICK  300
ALEAVDLRSS SNLSPPRVEV HSLDSYFIQV YNDFYHAALP EISDFLASVC RSYDLPLALS  360
WAPCARQGKG GSRHSDENFS QCVSTVDSAC FVLDEQSKYF LEACSEHHLL QGEGIVGKAF  420
KATKLFFVPE VATFSKTNYP LAHHAKISGL HAALAVPLKS KCNGSVEFVL EFFFPKACLD  480
TEAKQEMLKS LSVTLQQDFR SSNLVIDKDL ELEVVLLVRE DMVLSENPPT GAETAESLRE  540
IHLLQESSWI SHMIKANEKG KDVSLSWEYQ NEDPKDEFKL SSDRDNSKLD PAPNNFPSEA  600
EQFQQASTSG VKVDAGPGTE SASTGGGNML GSRRPGEKRR TKTEKIIGLD VLRQYFAGSL  660
KDAAKSIGVC PTTLKRICRH HGITRWPSRK IKKVGHSLKK LQLVMDSVQG AQGSIPLDSF  720
YTSFPELSSP NMSSNGTSLK SNDQLQHLNV PTENGGLAED KAAPRSPTSS GSGSSSNTVN  780
AANTLQVAED ADAVLKKAHS EAELQNGNQE ETKCLARTQS QFKEPPVPEN LHSLPGSGNM  840
SLRAGAAYKV KATFGEARIR FTLLPNWGYR ELQQEIARRF NIDDVSWFDL KYLDDDKEWV  900
LLTCEADLEE CIDIYRSSQS QTIKISLHEA FQIKLGGSFG STGQS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676777966

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018440650.1	0.0	PREDICTED: protein NLP1 isoform X1
Refseq	XP_018440651.1	0.0	PREDICTED: protein NLP1 isoform X1
Refseq	XP_018440652.1	0.0	PREDICTED: protein NLP1 isoform X1
Refseq	XP_018440653.1	0.0	PREDICTED: protein NLP1 isoform X1
Refseq	XP_018440655.1	0.0	PREDICTED: protein NLP1 isoform X1
Refseq	XP_018440656.1	0.0	PREDICTED: protein NLP1 isoform X1
Refseq	XP_018440657.1	0.0	PREDICTED: protein NLP1 isoform X1
Swissprot	Q8H111	0.0	NLP1_ARATH; Protein NLP1
TrEMBL	A0A078H3G7	0.0	A0A078H3G7_BRANA; BnaA07g03130D protein
TrEMBL	A0A3P6BIG6	0.0	A0A3P6BIG6_BRACM; Uncharacterized protein
STRING	Bra002025.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	0.0	Nin-like family protein

Publications ? help Back to Top
Suzuki W,Konishi M,Yanagisawa S The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor. Plant Signal Behav, 2014. [PMID:24270631]